Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY04118 | Canola | nucleus | 54.89 | 84.87 |
CDY09390 | Canola | nucleus | 53.8 | 83.19 |
CDY70142 | Canola | nucleus | 73.91 | 74.73 |
CDY14910 | Canola | nucleus | 52.72 | 72.93 |
CDY72283 | Canola | nucleus | 69.57 | 67.72 |
CDY53540 | Canola | nucleus | 67.39 | 63.92 |
CDY04117 | Canola | nucleus | 67.39 | 57.94 |
CDX96046 | Canola | nucleus | 52.17 | 41.2 |
CDX75732 | Canola | nucleus | 92.39 | 38.37 |
CDY51742 | Canola | nucleus | 100.0 | 38.02 |
CDY55238 | Canola | nucleus | 97.28 | 36.83 |
CDX97521 | Canola | nucleus | 95.65 | 36.29 |
CDX82515 | Canola | nucleus | 84.78 | 35.37 |
CDX97281 | Canola | nucleus, plastid | 69.02 | 32.99 |
AT3G13810.2 | Thale cress | nucleus | 89.13 | 31.91 |
CDX91304 | Canola | nucleus, plastid | 69.02 | 31.44 |
CDY24490 | Canola | nucleus | 70.11 | 29.66 |
CDX77936 | Canola | nucleus | 69.57 | 29.36 |
CDY59418 | Canola | nucleus | 64.13 | 28.57 |
CDY67009 | Canola | nucleus | 71.2 | 27.52 |
CDX94759 | Canola | nucleus | 67.93 | 26.94 |
CDY22307 | Canola | nucleus | 67.93 | 26.94 |
CDY45271 | Canola | nucleus | 60.87 | 26.92 |
CDX86010 | Canola | nucleus | 65.22 | 26.79 |
CDY18188 | Canola | nucleus | 69.02 | 26.51 |
CDX89862 | Canola | nucleus | 69.02 | 26.46 |
CDX81653 | Canola | nucleus | 66.85 | 26.34 |
CDY53836 | Canola | nucleus | 64.67 | 26.27 |
CDX81372 | Canola | nucleus | 69.57 | 26.18 |
CDY32514 | Canola | nucleus | 69.57 | 26.12 |
CDY57128 | Canola | nucleus | 69.57 | 26.02 |
CDY11241 | Canola | nucleus | 70.11 | 25.65 |
CDY44344 | Canola | nucleus | 69.57 | 25.6 |
CDY15814 | Canola | nucleus | 65.76 | 25.58 |
VIT_09s0002g02300.t01 | Wine grape | nucleus | 73.91 | 25.56 |
CDX80854 | Canola | nucleus | 69.57 | 25.35 |
CDY10404 | Canola | nucleus | 69.57 | 25.25 |
CDX70328 | Canola | nucleus | 69.57 | 24.9 |
CDY04203 | Canola | plastid | 51.63 | 24.68 |
CDY45270 | Canola | nucleus | 59.78 | 24.44 |
CDY36123 | Canola | nucleus | 50.0 | 24.34 |
CDY51986 | Canola | nucleus | 50.0 | 24.34 |
CDX84974 | Canola | nucleus | 50.54 | 24.28 |
CDY60366 | Canola | nucleus | 50.54 | 24.28 |
CDY04204 | Canola | nucleus | 47.28 | 24.23 |
CDY17440 | Canola | nucleus | 62.5 | 24.06 |
CDY03081 | Canola | nucleus | 67.93 | 23.86 |
CDY17615 | Canola | nucleus | 67.93 | 23.72 |
CDY17614 | Canola | nucleus, plastid | 65.76 | 23.59 |
CDY03080 | Canola | nucleus, plastid | 65.76 | 23.45 |
CDY07400 | Canola | nucleus | 51.63 | 23.0 |
CDY09400 | Canola | nucleus | 51.63 | 21.69 |
CDY17620 | Canola | nucleus | 52.17 | 21.62 |
CDY09391 | Canola | nucleus | 66.3 | 21.52 |
CDY15811 | Canola | nucleus | 66.3 | 21.48 |
CDY15800 | Canola | nucleus | 51.09 | 21.27 |
CDY60095 | Canola | nucleus | 51.09 | 21.27 |
CDY04102 | Canola | nucleus | 51.09 | 20.94 |
CDY63960 | Canola | nucleus | 50.54 | 20.62 |
CDY12268 | Canola | nucleus | 46.74 | 19.28 |
CDY68983 | Canola | nucleus | 36.41 | 17.14 |
CDY70938 | Canola | cytosol, nucleus | 13.59 | 9.16 |
CDY67587 | Canola | cytosol, nucleus | 8.7 | 7.11 |
Protein Annotations
MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078HJH6 | UniProt:A0A078HJH6 | EnsemblPlants:CDY37489 | ProteinID:CDY37489 |
ProteinID:CDY37489.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00064089001 |
InterPro:IPR013087 | PFAM:PF12171 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 |
SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EEED91 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
SEG:seg | : | : | : | : | : |
Description
BnaC01g37430DBnaC01g37430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJH6]
Coordinates
chrLK032401:+:247229..248300
Molecular Weight (calculated)
21041.0 Da
IEP (calculated)
9.748
GRAVY (calculated)
-1.062
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEDILLHQQ VQQQEENMSN LTSASGDQAS VSSGNRTEPQ KKRRNQPGNP DPESEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RSNKEVIRKK VYVCPEASCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DCKAHSKTCG TKEYRCDCGT LFSR
101: RSNKEVIRKK VYVCPEASCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DCKAHSKTCG TKEYRCDCGT LFSR
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Arabidopsis Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.