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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY04118 Canola nucleus 54.89 84.87
CDY09390 Canola nucleus 53.8 83.19
CDY70142 Canola nucleus 73.91 74.73
CDY14910 Canola nucleus 52.72 72.93
CDY72283 Canola nucleus 69.57 67.72
CDY53540 Canola nucleus 67.39 63.92
CDY04117 Canola nucleus 67.39 57.94
CDX96046 Canola nucleus 52.17 41.2
CDX75732 Canola nucleus 92.39 38.37
CDY51742 Canola nucleus 100.0 38.02
CDY55238 Canola nucleus 97.28 36.83
CDX97521 Canola nucleus 95.65 36.29
CDX82515 Canola nucleus 84.78 35.37
CDX97281 Canola nucleus, plastid 69.02 32.99
AT3G13810.2 Thale cress nucleus 89.13 31.91
CDX91304 Canola nucleus, plastid 69.02 31.44
CDY24490 Canola nucleus 70.11 29.66
CDX77936 Canola nucleus 69.57 29.36
CDY59418 Canola nucleus 64.13 28.57
CDY67009 Canola nucleus 71.2 27.52
CDX94759 Canola nucleus 67.93 26.94
CDY22307 Canola nucleus 67.93 26.94
CDY45271 Canola nucleus 60.87 26.92
CDX86010 Canola nucleus 65.22 26.79
CDY18188 Canola nucleus 69.02 26.51
CDX89862 Canola nucleus 69.02 26.46
CDX81653 Canola nucleus 66.85 26.34
CDY53836 Canola nucleus 64.67 26.27
CDX81372 Canola nucleus 69.57 26.18
CDY32514 Canola nucleus 69.57 26.12
CDY57128 Canola nucleus 69.57 26.02
CDY11241 Canola nucleus 70.11 25.65
CDY44344 Canola nucleus 69.57 25.6
CDY15814 Canola nucleus 65.76 25.58
VIT_09s0002g02300.t01 Wine grape nucleus 73.91 25.56
CDX80854 Canola nucleus 69.57 25.35
CDY10404 Canola nucleus 69.57 25.25
CDX70328 Canola nucleus 69.57 24.9
CDY04203 Canola plastid 51.63 24.68
CDY45270 Canola nucleus 59.78 24.44
CDY36123 Canola nucleus 50.0 24.34
CDY51986 Canola nucleus 50.0 24.34
CDX84974 Canola nucleus 50.54 24.28
CDY60366 Canola nucleus 50.54 24.28
CDY04204 Canola nucleus 47.28 24.23
CDY17440 Canola nucleus 62.5 24.06
CDY03081 Canola nucleus 67.93 23.86
CDY17615 Canola nucleus 67.93 23.72
CDY17614 Canola nucleus, plastid 65.76 23.59
CDY03080 Canola nucleus, plastid 65.76 23.45
CDY07400 Canola nucleus 51.63 23.0
CDY09400 Canola nucleus 51.63 21.69
CDY17620 Canola nucleus 52.17 21.62
CDY09391 Canola nucleus 66.3 21.52
CDY15811 Canola nucleus 66.3 21.48
CDY15800 Canola nucleus 51.09 21.27
CDY60095 Canola nucleus 51.09 21.27
CDY04102 Canola nucleus 51.09 20.94
CDY63960 Canola nucleus 50.54 20.62
CDY12268 Canola nucleus 46.74 19.28
CDY68983 Canola nucleus 36.41 17.14
CDY70938 Canola cytosol, nucleus 13.59 9.16
CDY67587 Canola cytosol, nucleus 8.7 7.11
Protein Annotations
MapMan:15.5.15Gene3D:3.30.160.60GO:A0A078HJH6UniProt:A0A078HJH6EnsemblPlants:CDY37489ProteinID:CDY37489
ProteinID:CDY37489.1GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0046872EnsemblPlantsGene:GSBRNA2T00064089001
InterPro:IPR013087PFAM:PF12171ScanProsite:PS00028PFscan:PS50157PANTHER:PTHR10593PANTHER:PTHR10593:SF49
SMART:SM00355SUPFAM:SSF57667UniParc:UPI0004EEED91InterPro:Znf_C2H2_jazInterPro:Znf_C2H2_sfInterPro:Znf_C2H2_type
SEG:seg:::::
Description
BnaC01g37430DBnaC01g37430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJH6]
Coordinates
chrLK032401:+:247229..248300
Molecular Weight (calculated)
21041.0 Da
IEP (calculated)
9.748
GRAVY (calculated)
-1.062
Length
184 amino acids
Sequence
(BLAST)
001: MNEDILLHQQ VQQQEENMSN LTSASGDQAS VSSGNRTEPQ KKRRNQPGNP DPESEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RSNKEVIRKK VYVCPEASCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DCKAHSKTCG TKEYRCDCGT LFSR
Best Arabidopsis Sequence Match ( AT1G55110.2 )
(BLAST)
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Arabidopsis Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.