CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024833.1-P	Field mustard	plastid	99.22	99.22
CDY04118	Canola	nucleus	22.61	97.48
CDY03080	Canola	nucleus, plastid	97.47	96.9
CDY09390	Canola	nucleus	22.22	95.8
CDY17440	Canola	nucleus	80.12	85.98
AT2G02080.3	Thale cress	nucleus, plastid	85.38	84.88
CDY15814	Canola	nucleus	76.22	82.66
CDY53540	Canola	nucleus	30.41	80.41
CDY14910	Canola	nucleus	18.32	70.68
CDY04117	Canola	nucleus	28.66	68.69
CDY59418	Canola	nucleus	53.8	66.83
CDY37489	Canola	nucleus	23.59	65.76
CDY72283	Canola	nucleus	24.17	65.61
CDX81653	Canola	nucleus	59.65	65.52
CDY70142	Canola	nucleus	18.71	52.75
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	34.11	48.08
KRG89168	Soybean	nucleus, plastid	31.58	46.55
CDY03081	Canola	nucleus	47.37	46.37
CDY17615	Canola	nucleus	47.56	46.3
CDY09391	Canola	nucleus	49.12	44.44
CDY15811	Canola	nucleus	48.34	43.66
GSMUA_Achr3P13990_001	Banana	nucleus	35.48	42.72
CDX97281	Canola	nucleus, plastid	31.77	42.34
CDX96046	Canola	nucleus	18.91	41.63
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	31.97	41.21
CDY22307	Canola	nucleus	37.04	40.95
CDX94759	Canola	nucleus	36.84	40.73
CDX91304	Canola	nucleus, plastid	31.77	40.35
GSMUA_Achr1P17940_001	Banana	nucleus	36.45	40.04
CDY24490	Canola	nucleus	33.92	40.0
CDY18188	Canola	nucleus	37.23	39.87
CDX89862	Canola	nucleus	37.04	39.58
GSMUA_Achr1P07110_001	Banana	nucleus	37.43	39.51
CDX77936	Canola	nucleus	33.53	39.45
CDY45271	Canola	nucleus	31.97	39.42
GSMUA_Achr10P...	Banana	nucleus	36.65	39.25
CDY32514	Canola	nucleus	36.84	38.57
CDX75732	Canola	nucleus	33.14	38.37
CDX82515	Canola	nucleus	32.55	37.87
CDY45270	Canola	nucleus	33.14	37.78
CDY11241	Canola	nucleus	37.04	37.77
GSMUA_Achr4P04310_001	Banana	nucleus	34.7	37.63
CDX86010	Canola	nucleus	32.75	37.5
CDY67009	Canola	nucleus	34.7	37.4
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	35.48	37.14
GSMUA_Achr9P23870_001	Banana	nucleus	31.38	37.1
CDY44344	Canola	nucleus	36.06	37.0
CDY53836	Canola	nucleus	32.55	36.87
CDX80854	Canola	nucleus	36.26	36.83
Os09t0555700-02	Rice	nucleus	38.21	36.64
CDY55238	Canola	nucleus	34.7	36.63
PGSC0003DMT400075837	Potato	nucleus	36.84	36.49
CDY10404	Canola	nucleus	35.87	36.29
CDX97521	Canola	nucleus	34.31	36.29
KRH49489	Soybean	nucleus, plastid	37.62	36.21
CDY51742	Canola	nucleus	34.11	36.16
KRH49485	Soybean	nucleus	38.21	36.1
Solyc04g008500.2.1	Tomato	nucleus	36.06	35.78
GSMUA_Achr1P02080_001	Banana	nucleus	38.01	35.65
GSMUA_Achr4P05240_001	Banana	nucleus	34.7	35.6
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	33.92	35.58
TraesCS5B01G358600.1	Wheat	nucleus, plastid	37.82	35.53
CDX70328	Canola	nucleus	35.48	35.41
VIT_01s0010g02100.t01	Wine grape	nucleus	39.38	35.31
TraesCS5D01G364900.1	Wheat	nucleus, plastid	37.62	35.28
TraesCS5A01G356100.1	Wheat	nucleus, plastid	37.43	35.23
CDY57128	Canola	nucleus	33.72	35.16
GSMUA_Achr11P...	Banana	nucleus	36.45	35.08
Os08t0554400-02	Rice	nucleus	37.43	35.04
KRG89167	Soybean	nucleus, plastid	37.43	34.97
CDX81372	Canola	nucleus	33.33	34.97
GSMUA_Achr11P...	Banana	nucleus	34.7	34.83
KRH34792	Soybean	nucleus	37.62	34.77
KRG90705	Soybean	nucleus	38.4	34.74
Zm00001d021403_P001	Maize	nucleus	32.75	34.71
KRG91985	Soybean	nucleus	37.82	34.64
KRH36039	Soybean	nucleus	38.4	34.5
KXG25416	Sorghum	nucleus	37.04	34.36
OQU89911	Sorghum	nucleus, plastid	35.67	34.33
EES11271	Sorghum	nucleus	38.4	32.89
Zm00001d026113_P006	Maize	nucleus	38.21	32.72
Zm00001d017560_P001	Maize	nucleus	36.84	32.47
TraesCS6B01G271000.1	Wheat	nucleus	36.45	32.47
KXG31026	Sorghum	nucleus	37.62	32.44
TraesCS6A01G254500.1	Wheat	nucleus	36.45	32.35
TraesCS6D01G235800.1	Wheat	nucleus	36.45	32.35
TraesCS2B01G421100.1	Wheat	nucleus	38.4	32.19
Os04t0566400-02	Rice	nucleus	38.21	31.97
Os02t0672100-01	Rice	nucleus	37.82	31.54
Zm00001d031992_P001	Maize	nucleus	37.04	31.41
Zm00001d002654_P003	Maize	nucleus	38.21	30.96
CDY12268	Canola	nucleus	26.9	30.94
GSMUA_Achr11P...	Banana	nucleus	33.72	30.57
TraesCS2A01G403200.2	Wheat	nucleus	38.6	29.86
TraesCS2D01G400300.2	Wheat	nucleus	38.4	29.76
KXG36163	Sorghum	nucleus	33.33	29.38
CDY36123	Canola	nucleus	21.25	28.84
CDY51986	Canola	nucleus	21.25	28.84
CDX84974	Canola	nucleus	21.25	28.46
CDY68983	Canola	nucleus	21.64	28.39
Zm00001d006319_P001	Maize	nucleus	30.8	28.26
CDY60366	Canola	nucleus	21.05	28.2
CDY04204	Canola	nucleus	19.69	28.13
CDY04203	Canola	plastid	20.47	27.27
CDY70938	Canola	cytosol, nucleus	14.43	27.11
CDY09400	Canola	nucleus	22.22	26.03
CDY07400	Canola	nucleus	20.86	25.91
CDY17620	Canola	nucleus	22.42	25.9
CDY67587	Canola	cytosol, nucleus	11.31	25.78
CDY15800	Canola	nucleus	22.03	25.57
CDY60095	Canola	nucleus	22.03	25.57
CDY63960	Canola	nucleus	22.22	25.28
CDY04102	Canola	nucleus	22.03	25.17

Protein Annotations

EnsemblPlants:CDY17614	EnsemblPlantsGene:GSBRNA2T00001822001	Gene3D:3.30.160.60	GO:A0A078FWX9	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF66
PFAM:PF13912	PFscan:PS50157	ProteinID:CDY17614	ProteinID:CDY17614.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0004EDF819	UniProt:A0A078FWX9	MapMan:15.5.15	:

Description

BnaA06g34330DBnaA06g34330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWX9]

Coordinates

chrLK032076:+:108844..112352

Molecular Weight (calculated)

55625.6 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.641

Length

513 amino acids

Sequence
(BLAST)

001: MSSSSYNTSV VPSSSSTQPF FITGSSAGDN AFDRKDTFMS MVQQPNSSAP QPKKRRNQPG NPSNLIDQSD PDAEVVALSP TTLMATNRFI CDVCKKGFQR
101: EQNLQLHRRG HNLPWKLKQK STKEVKRKVY ICPEPTCVHH DPARALGDLT GVKKHYYRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTK EYRCDCGTIF
201: SRRDSYITHR AFCDALIQET ARNPTVSFTS VTAASSGAGF RGFHGRLEGG NALSHHHLSD HPNSGFSSFG GYNLNIASSE NSRDFAPQTS NPNFLVQSQG
301: MLTQPNNNNN DQSFMNQQGL IQFDPVNNIN LKSSTTNNSF FNLGFFQENT KNSETAIPSL YSTDSLVHHR EESLNAGSNV SATALLQKAT QLGSITSNDP
401: SALFRGLASS SNSSSVVVND FGGGQIMGND NNGNLQGLMN SLVAVNGGGA GGSGGNIFNV DFGNNNVNMS GSDNLTLDFL GVGGMVRNVN RGGAGRGRVR
501: GDVSLNGELK FPE

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.