CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49485	Soybean	nucleus	91.8	92.82
CDY04118	Canola	nucleus	19.85	91.6
CDY09390	Canola	nucleus	19.85	91.6
CDY53540	Canola	nucleus	25.68	72.68
CDY04117	Canola	nucleus	26.96	69.16
KRG91985	Soybean	nucleus	67.76	66.43
KRH34792	Soybean	nucleus	67.03	66.31
KRG89168	Soybean	nucleus, plastid	39.89	62.93
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	40.8	61.54
KRH67268	Soybean	nucleus	26.96	56.7
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	39.89	55.03
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	46.99	52.65
GSMUA_Achr9P23870_001	Banana	nucleus	41.17	52.07
VIT_01s0010g02100.t01	Wine grape	nucleus	53.37	51.22
GSMUA_Achr4P04310_001	Banana	nucleus	44.08	51.16
KRG90705	Soybean	nucleus	52.46	50.79
GSMUA_Achr1P07110_001	Banana	nucleus	44.81	50.62
KRH36039	Soybean	nucleus	52.46	50.44
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	59.93	49.77
KRH49489	Soybean	nucleus, plastid	47.72	49.16
GSMUA_Achr3P13990_001	Banana	nucleus	37.7	48.59
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	42.62	47.85
GSMUA_Achr10P...	Banana	nucleus	41.53	47.6
GSMUA_Achr1P02080_001	Banana	nucleus	46.99	47.17
GSMUA_Achr1P17940_001	Banana	nucleus	39.71	46.68
Zm00001d021403_P001	Maize	nucleus	39.89	45.25
OQU89911	Sorghum	nucleus, plastid	43.35	44.65
PGSC0003DMT400075837	Potato	nucleus	42.08	44.59
Solyc04g008500.2.1	Tomato	nucleus	41.53	44.1
Os09t0555700-02	Rice	nucleus	42.44	43.55
CDY45271	Canola	nucleus	32.79	43.27
TraesCS5D01G364900.1	Wheat	nucleus, plastid	42.99	43.14
TraesCS5A01G356100.1	Wheat	nucleus, plastid	42.62	42.94
TraesCS5B01G358600.1	Wheat	nucleus, plastid	42.62	42.86
KRH15560	Soybean	nucleus	31.69	42.65
Bra026204.1-P	Field mustard	nucleus, plastid	34.24	41.78
KXG25416	Sorghum	nucleus	41.53	41.23
CDY17615	Canola	nucleus	39.53	41.18
CDY45270	Canola	nucleus	33.7	41.11
GSMUA_Achr11P...	Banana	nucleus	39.89	41.09
CDY03081	Canola	nucleus	39.16	41.03
KRH25657	Soybean	nucleus	35.15	40.98
KRH22332	Soybean	nucleus	35.15	40.72
KRH55868	Soybean	nucleus	35.15	40.72
KRH26995	Soybean	nucleus	35.52	40.62
KRH32064	Soybean	nucleus	34.06	40.39
KRH49655	Soybean	nucleus	26.59	40.33
Os08t0554400-02	Rice	nucleus	40.26	40.33
CDY59418	Canola	nucleus	30.24	40.19
KRH71370	Soybean	nucleus	33.52	40.17
GSMUA_Achr4P05240_001	Banana	nucleus	36.25	39.8
KRH10015	Soybean	nucleus	34.43	39.79
KRH05443	Soybean	nucleus	31.69	39.55
KRH51873	Soybean	nucleus	33.7	39.45
Bra026203.1-P	Field mustard	nucleus, plastid	33.33	39.44
KRH23306	Soybean	nucleus	34.43	39.38
KRH47108	Soybean	nucleus	35.7	39.36
CDY17440	Canola	nucleus	34.24	39.33
Bra024834.1-P	Field mustard	nucleus, plastid	39.53	39.31
GSMUA_Achr11P...	Banana	nucleus	36.43	39.14
KRG95590	Soybean	nucleus	32.79	39.13
CDY15814	Canola	nucleus	33.52	38.9
AT2G02080.3	Thale cress	nucleus, plastid	36.43	38.76
CDY09391	Canola	nucleus	39.89	38.62
Bra026819.1-P	Field mustard	nucleus	32.79	38.54
CDX81653	Canola	nucleus	32.79	38.54
EES11271	Sorghum	nucleus	41.89	38.4
Zm00001d026113_P006	Maize	nucleus	41.89	38.4
CDY15811	Canola	nucleus	39.53	38.2
Bra026616.1-P	Field mustard	nucleus	35.52	38.16
TraesCS2B01G421100.1	Wheat	nucleus	42.44	38.07
KRH61193	Soybean	nucleus	32.79	38.05
TraesCS6B01G271000.1	Wheat	nucleus	39.89	38.02
TraesCS6D01G235800.1	Wheat	nucleus	39.89	37.89
Os04t0566400-02	Rice	nucleus	42.26	37.85
Zm00001d017560_P001	Maize	nucleus	40.07	37.8
TraesCS6A01G254500.1	Wheat	nucleus	39.71	37.72
KRG95964	Soybean	nucleus	34.79	37.45
CDY17614	Canola	nucleus, plastid	34.97	37.43
KRH67672	Soybean	nucleus	34.97	37.35
GSMUA_Achr11P...	Banana	nucleus	38.43	37.28
Bra024833.1-P	Field mustard	plastid	34.79	37.23
KRH19850	Soybean	nucleus	35.52	37.14
Bra026617.1-P	Field mustard	nucleus	39.89	37.12
CDY03080	Canola	nucleus, plastid	34.79	37.02
AT1G14580.3	Thale cress	nucleus	32.42	37.01
KXG31026	Sorghum	nucleus	40.07	36.97
Bra040974.1-P	Field mustard	nucleus, plastid	39.34	36.92
KRG92880	Soybean	nucleus	35.52	36.86
Zm00001d031992_P001	Maize	nucleus	40.62	36.86
KRH32442	Soybean	nucleus	35.7	36.84
KRH44134	Soybean	nucleus	35.52	36.79
KRH76829	Soybean	nucleus	34.43	36.56
KRH71547	Soybean	nucleus	28.96	36.55
Os02t0672100-01	Rice	nucleus	40.8	36.42
KRH33908	Soybean	nucleus, plastid	35.15	36.14
KRH68150	Soybean	nucleus	29.69	35.98
AT2G02070.2	Thale cress	nucleus	39.34	35.88
KXG36163	Sorghum	nucleus	37.89	35.74
KRG96409	Soybean	nucleus	34.79	35.7
Zm00001d002654_P003	Maize	nucleus	40.98	35.55
TraesCS2D01G400300.2	Wheat	nucleus	42.44	35.2
TraesCS2A01G403200.2	Wheat	nucleus	42.44	35.14
KRH24905	Soybean	nucleus	34.61	35.12
KRH08298	Soybean	nucleus	32.6	35.03
Bra023223.1-P	Field mustard	plastid	30.6	35.0
KRH69941	Soybean	nucleus, plastid	33.33	34.86
KRH69942	Soybean	nucleus	33.33	34.86
KRH68532	Soybean	nucleus	32.42	34.77
Zm00001d006319_P001	Maize	nucleus	34.61	33.99
KRH26399	Soybean	nucleus	30.78	33.8
KRG89014	Soybean	nucleus	35.15	33.62
KRG96824	Soybean	nucleus	30.97	33.53
CDY12268	Canola	nucleus	26.96	33.18
KRH22919	Soybean	nucleus	30.24	32.61
CDY68983	Canola	nucleus	22.4	31.46
KRH41885	Soybean	nucleus	21.13	30.53
KRH60588	Soybean	nucleus	21.31	29.25
KRH58582	Soybean	nucleus	22.95	28.64
KRH42485	Soybean	nucleus	23.13	28.1
KRH38986	Soybean	nucleus	22.95	26.58
KRH48724	Soybean	nucleus	22.95	26.09

Protein Annotations

EntrezGene:102663407	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02012190	EnsemblPlantsGene:GLYMA_20G005800	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	UniProt:I1NCZ9	InterPro:IPR013087	EnsemblPlants:KRG89167
ProteinID:KRG89167	ProteinID:KRG89167.1	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF50	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00023DE6A7	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:564408..569908

Molecular Weight (calculated)

60183.3 Da

IEP (calculated)

9.515

GRAVY (calculated)

-0.748

Length

549 amino acids

Sequence
(BLAST)

001: MASASSSTPF LGIRQENQSH VTQQQQHQSS TTAASSTTTT SATPTTVPQK KRRNQPGTPY PDAEVIALSP KTLMATNRFI CEVCNKGFQR EQNLQLHRRG
101: HNLPWKLKQK TNKEPKRKVY LCPEPTCVHH DPSRALGDLT GIKKHYSRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYRCDCGTLF SRRDSFITHR
201: AFCDALAHDS ARHPSSLNPL GTHHLYGTNH MSLGLSAQLQ NHQAATNSIL SLGSAPKFEH LISPNLHHSP SSFGVQSPPP PPQSSSFFMT DPNQAFQDLQ
301: SQNQGHLFSN KQLHGLMQLP DLQGTTNINS TTSASSVSGS ANNTNLFNLS FFPNTNASGS IINDQFSNMT GVTNNNQGTA TLYSTNSPVN SNQVGLSSLF
401: GNSSVQQDNM SPHMSATALL QKAAQMGSTT TTNELGMRSS MEDDEHSNHL RGLMNSFVNG NNLGQFHNVV EEPKKMPQNN NLGLCFGGSD KLTLDFLGVG
501: GMVRNMNNGG GFSQREQQQQ QHSMGITMSP LDPKLESAKA NQHYGTSTL

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.