Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G271000.1 | Wheat | nucleus | 98.62 | 98.96 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 98.62 | 98.62 |
| CDY04118 | Canola | nucleus | 17.47 | 84.87 |
| CDY09390 | Canola | nucleus | 17.3 | 84.03 |
| KXG31026 | Sorghum | nucleus | 74.74 | 72.61 |
| Zm00001d017560_P001 | Maize | nucleus | 72.84 | 72.34 |
| CDY53540 | Canola | nucleus | 21.45 | 63.92 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 72.66 | 63.35 |
| CDY04117 | Canola | nucleus | 23.36 | 63.08 |
| KRG89168 | Soybean | nucleus, plastid | 33.91 | 56.32 |
| TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 41.0 | 43.49 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 42.21 | 42.66 |
| KRH49489 | Soybean | nucleus, plastid | 39.27 | 42.59 |
| KRG90705 | Soybean | nucleus | 41.35 | 42.15 |
| GSMUA_Achr10P... | Banana | nucleus | 34.6 | 41.75 |
| KRH36039 | Soybean | nucleus | 41.18 | 41.68 |
| TraesCS3A01G170700.1 | Wheat | nucleus | 34.08 | 40.29 |
| TraesCS6A01G126000.1 | Wheat | nucleus | 28.72 | 39.71 |
| CDY59418 | Canola | nucleus | 28.37 | 39.71 |
| KRG89167 | Soybean | nucleus, plastid | 37.72 | 39.71 |
| CDY03081 | Canola | nucleus | 35.99 | 39.69 |
| KRH49485 | Soybean | nucleus | 37.2 | 39.59 |
| PGSC0003DMT400075837 | Potato | nucleus | 35.47 | 39.58 |
| CDY17615 | Canola | nucleus | 35.99 | 39.47 |
| TraesCS3A01G105100.1 | Wheat | nucleus | 33.56 | 39.11 |
| KRH34792 | Soybean | nucleus | 37.54 | 39.1 |
| CDY45271 | Canola | nucleus | 28.03 | 38.94 |
| Solyc04g008500.2.1 | Tomato | nucleus | 34.78 | 38.88 |
| CDY17440 | Canola | nucleus | 32.01 | 38.7 |
| KRG91985 | Soybean | nucleus | 37.2 | 38.39 |
| TraesCS4A01G041400.1 | Wheat | nucleus | 32.01 | 37.99 |
| Bra024834.1-P | Field mustard | nucleus, plastid | 36.16 | 37.86 |
| CDY15814 | Canola | nucleus | 30.8 | 37.63 |
| CDY45270 | Canola | nucleus | 29.07 | 37.33 |
| Bra026204.1-P | Field mustard | nucleus, plastid | 29.07 | 37.33 |
| Bra026616.1-P | Field mustard | nucleus | 32.87 | 37.18 |
| CDY15811 | Canola | nucleus | 36.51 | 37.15 |
| Bra026819.1-P | Field mustard | nucleus | 29.93 | 37.05 |
| CDX81653 | Canola | nucleus | 29.93 | 37.05 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 33.05 | 37.02 |
| TraesCS3A01G205800.1 | Wheat | nucleus | 30.28 | 36.69 |
| CDY09391 | Canola | nucleus | 35.99 | 36.68 |
| CDY17614 | Canola | nucleus, plastid | 32.35 | 36.45 |
| Bra024833.1-P | Field mustard | plastid | 32.18 | 36.26 |
| GSMUA_Achr11P... | Banana | nucleus | 34.95 | 35.69 |
| CDY03080 | Canola | nucleus, plastid | 31.66 | 35.47 |
| AT1G14580.3 | Thale cress | nucleus | 29.41 | 35.34 |
| TraesCS4A01G008900.1 | Wheat | nucleus | 29.58 | 35.26 |
| Bra026617.1-P | Field mustard | nucleus | 35.99 | 35.25 |
| Bra040974.1-P | Field mustard | nucleus, plastid | 35.64 | 35.21 |
| VIT_01s0010g02090.t01 | Wine grape | extracellular, vacuole | 40.14 | 35.1 |
| Bra026203.1-P | Field mustard | nucleus, plastid | 28.03 | 34.91 |
| AT2G02070.2 | Thale cress | nucleus | 36.16 | 34.72 |
| TraesCS2A01G289500.1 | Wheat | nucleus | 27.68 | 33.13 |
| Bra023223.1-P | Field mustard | plastid | 27.51 | 33.12 |
| CDY12268 | Canola | nucleus | 24.22 | 31.39 |
| CDY68983 | Canola | nucleus | 20.59 | 30.43 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 20.42 | 28.43 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 20.59 | 24.24 |
| TraesCS2A01G188400.2 | Wheat | nucleus | 31.49 | 21.93 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G254500.1 | EnsemblPlantsGene:TraesCS6A01G254500 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF56 |
| PFAM:PF12171 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:471799118..471806676
Molecular Weight (calculated)
60591.5 Da
IEP (calculated)
9.145
GRAVY (calculated)
-0.493
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNSSAAAV AALFGIREGH QQDQMKPLLA QQQRQHVVAP PSALLTAGPD QAAAAAPPVK KKRTMPDPDA EVIALSPKTL MATNRFVCEV CNKGFQREQN
101: LQLHRRGHNL PWKLKQKDPN QVQRRRVYLC PEPTCVHHEP GRALGDLTGI KKHFCRKHGE KKWKCDKCAK RYAVQSDWKA HSKICGTREY RCDCGTLFSR
201: RDSFITHRAF CDALAQESAR LPPGAGHLYG ATGAANMALS LSQVGSSLHD AHGQYHQASS DLLRFGGGGG GGMAARLDHL LSSSNAPSFR HLPPPQAPPF
301: HLGSAQEFVD GNGSPAFLQG KPFHGLMQLP DLQGNGSGGT SSSAPGLFNL GYIANSGNSS GTSSHGHASQ GHMANDQISE GGGGGGAGSE NSGAAFFSAG
401: GNFSGGDHQF APSGMYNEQS VMMPQMSATA LLQKAAQMGS STSADGGGAS VFGGFMGSSV PQGRAPMLDQ GQMHLQSLMN SLAGGGNGGG MFGGANGRGM
501: IDPRLYDMDQ HEVKFSQGRG GGVGGGDVTR DFLGVGGRGD MMRGMSVARG ENHSGSNMSF LEAEMKSASS PFNGGRMQ
101: LQLHRRGHNL PWKLKQKDPN QVQRRRVYLC PEPTCVHHEP GRALGDLTGI KKHFCRKHGE KKWKCDKCAK RYAVQSDWKA HSKICGTREY RCDCGTLFSR
201: RDSFITHRAF CDALAQESAR LPPGAGHLYG ATGAANMALS LSQVGSSLHD AHGQYHQASS DLLRFGGGGG GGMAARLDHL LSSSNAPSFR HLPPPQAPPF
301: HLGSAQEFVD GNGSPAFLQG KPFHGLMQLP DLQGNGSGGT SSSAPGLFNL GYIANSGNSS GTSSHGHASQ GHMANDQISE GGGGGGAGSE NSGAAFFSAG
401: GNFSGGDHQF APSGMYNEQS VMMPQMSATA LLQKAAQMGS STSADGGGAS VFGGFMGSSV PQGRAPMLDQ GQMHLQSLMN SLAGGGNGGG MFGGANGRGM
501: IDPRLYDMDQ HEVKFSQGRG GGVGGGDVTR DFLGVGGRGD MMRGMSVARG ENHSGSNMSF LEAEMKSASS PFNGGRMQ
001: MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ APLPPLEAPP QKKKRNQPRT PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR
101: RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT
201: HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301: HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG
401: LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN
501: VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601: SF
101: RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT
201: HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301: HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG
401: LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN
501: VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601: SF
Arabidopsis Description
IDD5Protein indeterminate-domain 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.