Factsheet for TraesCS6B01G271000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G235800.1	Wheat	nucleus	99.31	98.96
TraesCS6A01G254500.1	Wheat	nucleus	98.96	98.62
CDY04118	Canola	nucleus	17.53	84.87
CDY09390	Canola	nucleus	17.36	84.03
KXG31026	Sorghum	nucleus	75.35	72.94
Zm00001d017560_P001	Maize	nucleus	73.44	72.68
TraesCS2B01G421100.1	Wheat	nucleus	72.74	68.46
CDY53540	Canola	nucleus	21.35	63.4
CDY04117	Canola	nucleus	23.44	63.08
KRG89168	Soybean	nucleus, plastid	33.85	56.03
TraesCS5B01G358600.1	Wheat	nucleus, plastid	40.8	43.04
VIT_01s0010g02100.t01	Wine grape	nucleus	42.19	42.48
KRH49489	Soybean	nucleus, plastid	39.24	42.4
KRG90705	Soybean	nucleus	41.32	41.98
KRH36039	Soybean	nucleus	41.32	41.68
TraesCS6B01G154000.1	Wheat	nucleus	29.51	41.56
GSMUA_Achr10P...	Banana	nucleus	34.2	41.13
TraesCS3B01G195900.1	Wheat	nucleus	34.2	40.12
KRG89167	Soybean	nucleus, plastid	38.02	39.89
CDY03081	Canola	nucleus	36.28	39.89
CDY59418	Canola	nucleus	28.47	39.71
CDY17615	Canola	nucleus	36.28	39.66
KRH49485	Soybean	nucleus	37.15	39.41
PGSC0003DMT400075837	Potato	nucleus	35.42	39.38
CDY45271	Canola	nucleus	28.12	38.94
KRH34792	Soybean	nucleus	37.5	38.92
CDY17440	Canola	nucleus	32.12	38.7
Solyc04g008500.2.1	Tomato	nucleus	34.72	38.68
TraesCS3B01G123600.1	Wheat	nucleus	33.16	38.43
KRG91985	Soybean	nucleus	37.15	38.21
Bra024834.1-P	Field mustard	nucleus, plastid	36.46	38.04
CDY15814	Canola	nucleus	30.9	37.63
Bra026204.1-P	Field mustard	nucleus, plastid	29.17	37.33
CDY45270	Canola	nucleus	29.17	37.33
CDY15811	Canola	nucleus	36.81	37.32
TraesCS3B01G237700.1	Wheat	nucleus	30.56	37.29
Bra026616.1-P	Field mustard	nucleus	32.99	37.18
AT2G02080.3	Thale cress	nucleus, plastid	33.16	37.02
TraesCS4B01G262400.1	Wheat	nucleus	33.85	36.93
CDY09391	Canola	nucleus	36.28	36.86
CDX81653	Canola	nucleus	29.86	36.83
Bra026819.1-P	Field mustard	nucleus	29.86	36.83
CDY17614	Canola	nucleus, plastid	32.47	36.45
Bra024833.1-P	Field mustard	plastid	32.29	36.26
GSMUA_Achr11P...	Banana	nucleus	35.07	35.69
CDY03080	Canola	nucleus, plastid	31.77	35.47
Bra026617.1-P	Field mustard	nucleus	36.28	35.42
Bra040974.1-P	Field mustard	nucleus, plastid	35.94	35.38
AT1G14580.3	Thale cress	nucleus	29.51	35.34
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	40.1	34.95
Bra026203.1-P	Field mustard	nucleus, plastid	28.12	34.91
AT2G02070.2	Thale cress	nucleus	36.46	34.88
TraesCS3B01G497200.1	Wheat	nucleus	30.9	34.83
TraesCS4B01G296200.1	Wheat	nucleus	28.82	34.3
Bra023223.1-P	Field mustard	plastid	27.6	33.12
TraesCS2B01G306100.1	Wheat	nucleus	27.6	32.92
CDY12268	Canola	nucleus	24.31	31.39
CDY68983	Canola	nucleus	20.66	30.43
TraesCS4B01G230800.1	Wheat	nucleus, plastid	20.14	28.64
TraesCS5B01G232200.1	Wheat	nucleus	20.49	23.98
TraesCS2B01G218900.1	Wheat	nucleus	31.42	22.57

Protein Annotations

EnsemblPlants:TraesCS6B01G271000.1	EnsemblPlantsGene:TraesCS6B01G271000	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF56
PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
MapMan:15.5.15	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:487829221..487837608

Molecular Weight (calculated)

60397.2 Da

IEP (calculated)

9.007

GRAVY (calculated)

-0.495

Length

576 amino acids

Sequence
(BLAST)

001: MASNSSAAAV AALFGIREGH QQDQMKPLLA QHQRQHVAAP PSALLTAGPD QAAAAAPPVK KKRTMPDPDA EVIALSPKTL MATNRFVCEV CNKGFQREQN
101: LQLHRRGHNL PWKLKQKDPN QVQRRRVYLC PEPTCVHHEP GRALGDLTGI KKHFCRKHGE KKWKCDKCAK RYAVQSDWKA HSKICGTREY RCDCGTLFSR
201: RDSFITHRAF CDALAQESAR LPPGAGHLYG ATGAANMALS LSQVGSSLHD AHGQYHQASS DLLRFGGGGG GGMAARLDHL LSSSNAPSFR HLPPPQAPPF
301: HLGSAQEFVD GNGSPAFLQG KPFHGLMQLP DLQGNGSGGT SSSAPGLFNL GYIANSANSS GTSSHGHASQ GHMANDQISE GGGGGGAGSE NSGAAFFSAG
401: GNFSGGDHQV APSGMYNEQS VMMPQMSATA LLQKAAQMGS STSADGGGAS VFGGFMGSSV PQGRAPMLDQ GQMHLQSLMN SLAGGGNGGG MFGGANGRGM
501: IDPRLYDMDQ HEVKFSQGRG GAGGDVTRDF LGVGGRGDMM RGMSVARGEN HSGSDMSFLE AEMKSASSPF NGGRMQ

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.