Factsheet for TraesCS3B01G237700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G209800.1	Wheat	nucleus	96.4	95.99
TraesCS3A01G205800.1	Wheat	nucleus	96.61	95.6
HORVU3Hr1G049810.3	Barley	nucleus	92.58	94.79
Zm00001d011223_P002	Maize	nucleus	56.14	56.62
EES00944	Sorghum	nucleus	57.42	56.34
Zm00001d044261_P001	Maize	nucleus	55.72	54.79
Os01t0572300-01	Rice	nucleus	51.69	45.44
TraesCS3B01G123600.1	Wheat	nucleus	42.16	40.04
TraesCS3B01G195900.1	Wheat	nucleus	38.56	37.07
TraesCS6B01G154000.1	Wheat	nucleus	31.99	36.92
TraesCS4B01G262400.1	Wheat	nucleus	40.04	35.8
TraesCS4B01G296200.1	Wheat	nucleus	33.26	32.44
TraesCS3B01G497200.1	Wheat	nucleus	34.75	32.09
TraesCS2B01G306100.1	Wheat	nucleus	32.63	31.88
TraesCS2B01G421100.1	Wheat	nucleus	40.25	31.05
TraesCS5B01G358600.1	Wheat	nucleus, plastid	35.59	30.77
TraesCS6B01G271000.1	Wheat	nucleus	37.29	30.56
TraesCS4B01G230800.1	Wheat	nucleus, plastid	24.79	28.89
TraesCS5B01G232200.1	Wheat	nucleus	24.58	23.58
TraesCS2B01G218900.1	Wheat	nucleus	34.53	20.32

Protein Annotations

EnsemblPlants:TraesCS3B01G237700.1	EnsemblPlantsGene:TraesCS3B01G237700	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF101	PFAM:PF00096
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15

Description

No Description!

Coordinates

chr3B:-:372894610..372896928

Molecular Weight (calculated)

51178.1 Da

IEP (calculated)

8.409

GRAVY (calculated)

-0.653

Length

472 amino acids

Sequence
(BLAST)

001: MYHHHLQQQQ QRGESEAAAS ADQDSSMSNL TTSASAFANP PPPPTPASNK RKRSLPGNPD PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG
101: HNLPWKLKQR GSKEVVRKKV YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYKCDCGTV FSRRDSFITH
201: RAFCDALTEE SNKAISGGGL PLPPIAHAQH HAMLYSPHDL MQQQHHHHHQ ELAAFQDQHH QVLQQHCNFD VKPEMQPWPT MPYDDVHHPL LQPLCSATAQ
301: SSATSVPTPT QQQQLPAAAA HLSATALLQK AAQMGATIGG AGAGGAGVHY TQMAGSATSA TGSATFGLGL SCLSNQQMMS LARTASQGRS GEEGVASGGA
401: NDGMTRDFLG LRAFSHRDIL GLAGFDSSCM GAAVNTAGNN TNMAPCYEPK QQGQPPQQQN SNEPWHGMGS HS

Best Arabidopsis Sequence Match ( AT1G55110.2 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.