Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G041400.1 | Wheat | nucleus | 88.07 | 95.48 |
| TraesCS4D01G262500.1 | Wheat | nucleus | 93.75 | 94.11 |
| HORVU4Hr1G070950.8 | Barley | nucleus | 92.8 | 91.42 |
| EER95332 | Sorghum | nucleus | 74.24 | 74.67 |
| Os03t0197800-00 | Rice | nucleus | 76.7 | 73.37 |
| Zm00001d028139_P001 | Maize | nucleus | 74.24 | 72.73 |
| VIT_04s0023g01430.t01 | Wine grape | nucleus | 47.92 | 50.0 |
| AT3G50700.1 | Thale cress | nucleus | 42.23 | 49.34 |
| Bra036098.1-P | Field mustard | nucleus, plastid | 40.72 | 49.31 |
| CDX77936 | Canola | nucleus | 40.53 | 49.08 |
| CDY24490 | Canola | nucleus | 40.34 | 48.97 |
| KRH76829 | Soybean | nucleus | 46.21 | 47.2 |
| CDY67009 | Canola | nucleus | 42.05 | 46.64 |
| CDX81372 | Canola | nucleus | 42.61 | 46.01 |
| Bra037151.1-P | Field mustard | nucleus | 42.61 | 45.73 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 45.45 | 45.71 |
| AT5G66730.1 | Thale cress | nucleus | 43.18 | 45.6 |
| CDY57128 | Canola | nucleus | 42.42 | 45.53 |
| GSMUA_Achr7P25960_001 | Banana | nucleus | 50.76 | 45.27 |
| GSMUA_Achr4P14030_001 | Banana | nucleus | 45.45 | 44.2 |
| KRH08298 | Soybean | nucleus | 42.42 | 43.84 |
| KRH69942 | Soybean | nucleus | 43.56 | 43.81 |
| KRH69941 | Soybean | nucleus, plastid | 43.56 | 43.81 |
| GSMUA_Achr3P29940_001 | Banana | nucleus | 46.02 | 41.82 |
| TraesCS6B01G154000.1 | Wheat | nucleus | 32.01 | 41.32 |
| TraesCS3B01G237700.1 | Wheat | nucleus | 35.8 | 40.04 |
| GSMUA_Achr4P07200_001 | Banana | nucleus | 40.34 | 39.44 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 36.55 | 39.31 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 36.55 | 38.83 |
| TraesCS3B01G497200.1 | Wheat | nucleus | 34.28 | 35.42 |
| TraesCS4B01G296200.1 | Wheat | nucleus | 31.82 | 34.71 |
| Solyc02g062940.2.1 | Tomato | nucleus | 42.99 | 34.6 |
| TraesCS2B01G306100.1 | Wheat | nucleus | 31.06 | 33.95 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 36.93 | 33.85 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 34.85 | 33.7 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 37.12 | 32.03 |
| PGSC0003DMT400040064 | Potato | nucleus | 42.99 | 30.84 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 23.3 | 30.37 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 40.34 | 26.56 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 24.43 | 26.22 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G262400.1 | EnsemblPlantsGene:TraesCS4B01G262400 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF20 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr4B:-:531578673..531581213
Molecular Weight (calculated)
55552.9 Da
IEP (calculated)
9.051
GRAVY (calculated)
-0.533
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDTSSATA KSGGAPPLPP PGPPAKKKRA LPGMPDPDAE VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSGKE VRKRVYVCPE
101: SSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGSREYRC DCGTLFSRRD SFITHRAFCD ALAEESAKAR APPPEDGSSG
201: AAGPPALPPP QAPPPAAPMP LQQLPPAPAP APAPQQHEEQ EREIGAAAPE SVVQYAPPAP PMPSPPSVNG ANVSASTSSV SATSQSLLGS MFAPSSVAQA
301: PQYPERALAA KPPSLCLATD AASAQFSAPA ADRQQQQQLP PPSPSPSAHM SATALLQKAA QMGATSSSSS FLRGLGLDIS SSSPASTSSG QQQHHHQQHH
401: QEAMQMQFPE GSLQQWPPRL EPEPAPMMSA GLGLGLPYDS TGGPMGLPEL MMGQSSLFSA KPATLDFLGL GMSPTGATTS RGLPVFMQPM GGAVGMARSG
501: SGAAETFGAG RGAQAKPWER NPSSSPIL
101: SSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGSREYRC DCGTLFSRRD SFITHRAFCD ALAEESAKAR APPPEDGSSG
201: AAGPPALPPP QAPPPAAPMP LQQLPPAPAP APAPQQHEEQ EREIGAAAPE SVVQYAPPAP PMPSPPSVNG ANVSASTSSV SATSQSLLGS MFAPSSVAQA
301: PQYPERALAA KPPSLCLATD AASAQFSAPA ADRQQQQQLP PPSPSPSAHM SATALLQKAA QMGATSSSSS FLRGLGLDIS SSSPASTSSG QQQHHHQQHH
401: QEAMQMQFPE GSLQQWPPRL EPEPAPMMSA GLGLGLPYDS TGGPMGLPEL MMGQSSLFSA KPATLDFLGL GMSPTGATTS RGLPVFMQPM GGAVGMARSG
501: SGAAETFGAG RGAQAKPWER NPSSSPIL
001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
Arabidopsis Description
IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.