Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G041400.1 | Wheat | nucleus | 67.75 | 76.8 |
| EER95332 | Sorghum | nucleus | 73.01 | 76.76 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 73.37 | 76.7 |
| TraesCS4D01G262500.1 | Wheat | nucleus | 71.56 | 75.1 |
| Zm00001d028139_P001 | Maize | nucleus | 72.83 | 74.58 |
| HORVU4Hr1G070950.8 | Barley | nucleus | 71.01 | 73.13 |
| VIT_04s0023g01430.t01 | Wine grape | nucleus | 46.01 | 50.2 |
| AT3G50700.1 | Thale cress | nucleus | 39.67 | 48.45 |
| CDX77936 | Canola | nucleus | 38.04 | 48.17 |
| KRH76829 | Soybean | nucleus | 44.93 | 47.97 |
| Bra036098.1-P | Field mustard | nucleus, plastid | 37.86 | 47.94 |
| CDY24490 | Canola | nucleus | 37.68 | 47.82 |
| Os01t0242200-01 | Rice | nucleus | 35.69 | 47.47 |
| CDY67009 | Canola | nucleus | 39.67 | 46.01 |
| CDX81372 | Canola | nucleus | 40.4 | 45.6 |
| AT5G66730.1 | Thale cress | nucleus | 41.12 | 45.4 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 42.93 | 45.14 |
| GSMUA_Achr7P25960_001 | Banana | nucleus | 48.37 | 45.1 |
| Bra037151.1-P | Field mustard | nucleus | 40.04 | 44.92 |
| KRH08298 | Soybean | nucleus | 41.49 | 44.81 |
| KRH69941 | Soybean | nucleus, plastid | 42.57 | 44.76 |
| KRH69942 | Soybean | nucleus | 42.57 | 44.76 |
| CDY57128 | Canola | nucleus | 39.86 | 44.72 |
| GSMUA_Achr4P14030_001 | Banana | nucleus | 42.75 | 43.46 |
| GSMUA_Achr3P29940_001 | Banana | nucleus | 45.47 | 43.2 |
| Os01t0195000-01 | Rice | nucleus | 36.05 | 40.86 |
| GSMUA_Achr4P07200_001 | Banana | nucleus | 38.95 | 39.81 |
| Os01t0935000-01 | Rice | nucleus | 32.61 | 37.82 |
| Os08t0554400-02 | Rice | nucleus | 37.32 | 37.59 |
| Os01t0572300-01 | Rice | nucleus | 36.05 | 37.06 |
| Os10t0419200-01 | Rice | nucleus | 30.98 | 36.0 |
| Os02t0518500-00 | Rice | nucleus | 32.07 | 35.98 |
| Solyc02g062940.2.1 | Tomato | nucleus | 42.75 | 35.98 |
| Os09t0555700-02 | Rice | nucleus | 34.6 | 35.7 |
| Os02t0672100-01 | Rice | nucleus | 38.22 | 34.31 |
| Os07t0581366-00 | Rice | cytosol, nucleus | 37.68 | 32.81 |
| Os04t0566400-02 | Rice | nucleus | 36.05 | 32.46 |
| PGSC0003DMT400040064 | Potato | nucleus | 42.93 | 32.2 |
| Os03t0237250-01 | Rice | plastid | 24.28 | 30.59 |
| Os08t0467100-01 | Rice | nucleus | 23.37 | 24.2 |
Protein Annotations
| MapMan:15.5.15 | MapMan:26.7.1 | Gene3D:3.30.160.60 | EntrezGene:4331949 | ProteinID:ABF94468.1 | ProteinID:BAS82785.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | EnsemblPlantsGene:Os03g0197800 |
| EnsemblPlants:Os03t0197800-00 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF20 | UniProt:Q10QG1 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0000DB48B1 | RefSeq:XP_015632656.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
indeterminate domain 1Similar to Zinc finger, C2H2 type family protein, expressed. (Os03t0197800-00)
Coordinates
chr3:+:5134409..5137441
Molecular Weight (calculated)
57542.9 Da
IEP (calculated)
8.551
GRAVY (calculated)
-0.486
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVETSSGTA ERGAGAGAQQ QPPPQPQPQP PAKKKRALPG MPDPDAEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSGKEVRK
101: RVYVCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHTKTC GSREYRCDCG TLFSRRDSFI THRAFCDALA EESAKARAAP
201: PPPADEDGTS ASAGAPPPQA PLPPPAPVPA PAPPPPPAAA PAPAAQPEQR DRDAALDQFA TPAPAPAPPP VTAPPPPPVA APNDCVSSSS SGVAPTSQSL
301: LSSMFAPPSV AQAPQYADPI GVGAGGHQER AVPAKPPALC LAPNASSSLF TAPVPADRQQ FAPPPPPSPS PHMSATALLQ KAAQMGATSS SSSFLRCLGL
401: DMSSSSSAPP SSSGQQQQHH HHHHQETMQV PLPASSLPEW PPRLQPEPSP MLSSGLGLGL PYDATGGPVS LPELMMGQST LFSAKPATLD FLGLGVSPTG
501: ASTSRGFPTF IQPIGGAVSL AGSATVAAET FGAAHGGQAN PWERNPSSSP IL
101: RVYVCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHTKTC GSREYRCDCG TLFSRRDSFI THRAFCDALA EESAKARAAP
201: PPPADEDGTS ASAGAPPPQA PLPPPAPVPA PAPPPPPAAA PAPAAQPEQR DRDAALDQFA TPAPAPAPPP VTAPPPPPVA APNDCVSSSS SGVAPTSQSL
301: LSSMFAPPSV AQAPQYADPI GVGAGGHQER AVPAKPPALC LAPNASSSLF TAPVPADRQQ FAPPPPPSPS PHMSATALLQ KAAQMGATSS SSSFLRCLGL
401: DMSSSSSAPP SSSGQQQQHH HHHHQETMQV PLPASSLPEW PPRLQPEPSP MLSSGLGLGL PYDATGGPVS LPELMMGQST LFSAKPATLD FLGLGVSPTG
501: ASTSRGFPTF IQPIGGAVSL AGSATVAAET FGAAHGGQAN PWERNPSSSP IL
001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS
Arabidopsis Description
IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.