Factsheet for PGSC0003DMT400033039

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g01430.t01	Wine grape	nucleus	62.1	64.43
KRH76829	Soybean	nucleus	59.43	60.35
KRH08298	Soybean	nucleus	56.0	57.53
CDY24490	Canola	nucleus	47.43	57.24
CDX77936	Canola	nucleus	47.24	56.88
AT3G50700.1	Thale cress	nucleus	48.95	56.86
Bra036098.1-P	Field mustard	nucleus, plastid	47.05	56.65
KRH69942	Soybean	nucleus	56.19	56.19
KRH69941	Soybean	nucleus, plastid	56.19	56.19
AT5G66730.1	Thale cress	nucleus	51.43	54.0
CDY67009	Canola	nucleus	48.57	53.57
CDX81372	Canola	nucleus	48.95	52.56
Bra037151.1-P	Field mustard	nucleus	49.14	52.44
CDY57128	Canola	nucleus	48.95	52.24
PGSC0003DMT400040064	Potato	nucleus	71.24	50.82
GSMUA_Achr4P14030_001	Banana	nucleus	48.19	46.59
PGSC0003DMT400013174	Potato	nucleus	44.38	46.05
TraesCS4A01G041400.1	Wheat	nucleus	42.29	45.59
TraesCS4B01G262400.1	Wheat	nucleus	45.71	45.45
EER95332	Sorghum	nucleus	44.95	44.95
GSMUA_Achr3P29940_001	Banana	nucleus	49.71	44.92
GSMUA_Achr7P25960_001	Banana	nucleus	50.29	44.59
TraesCS4D01G262500.1	Wheat	nucleus	44.38	44.3
HORVU4Hr1G070950.8	Barley	nucleus	44.57	43.66
Zm00001d028139_P001	Maize	nucleus	44.76	43.6
GSMUA_Achr4P07200_001	Banana	nucleus	44.57	43.33
Os03t0197800-00	Rice	nucleus	45.14	42.93
PGSC0003DMT400063501	Potato	nucleus	28.19	41.11
PGSC0003DMT400004390	Potato	nucleus	35.05	40.35
PGSC0003DMT400021189	Potato	nucleus	35.05	39.32
PGSC0003DMT400027159	Potato	nucleus	34.86	37.2
PGSC0003DMT400049788	Potato	nucleus	33.71	37.11
PGSC0003DMT400029550	Potato	nucleus	31.81	36.87
PGSC0003DMT400020945	Potato	nucleus	35.05	36.73
PGSC0003DMT400006385	Potato	nucleus	37.71	36.6
PGSC0003DMT400012504	Potato	nucleus	34.86	36.45
PGSC0003DMT400008694	Potato	nucleus, plastid	36.57	36.36
PGSC0003DMT400024272	Potato	nucleus	34.1	36.16
PGSC0003DMT400075837	Potato	nucleus	33.52	33.98
PGSC0003DMT400069306	Potato	nucleus	24.0	30.66
PGSC0003DMT400079735	Potato	nucleus, plastid	24.38	29.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400033039	EnsemblPlantsGene:PGSC0003DMG400012684	EntrezGene:102584809	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF20
PFAM:PF00096	PFscan:PS50157	PGSC:PGSC0003DMG400012684	RefSeq:XP_006363144.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002953418	UniProt:M1AYI4	MapMan:15.5.15	:

Description

C2H2L domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400012684]

Coordinates

chr2:+:40803381..40806503

Molecular Weight (calculated)

55072.9 Da

IEP (calculated)

8.538

GRAVY (calculated)

-0.429

Length

525 amino acids

Sequence
(BLAST)

001: MPADPDNSSA MNDSTGSGEA SVSSSGNQAV PLKESAKKKR NLPGMPDPDA EVIALSPTTL MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSSN
101: EVKKRVYVCP ESSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR DSFITHRAFC DALAQESAKT
201: LPEKPPSTNE EPKTQAVASS SPPPPTPPAP PPATESQPPP PAPKPLMTPT VPPSTAVMTF ASSVQNQELR ENPITNSAGT ATKQVLEEAA AVASLTGNCS
301: SSCSNGSSSS SVFGSLFASS TASGNLPSQA PVFSDMFRAM APESTLEMAP PSSTEPISLG LAMSHSSSFF RQAGQERRQY APTPQPAMSA TALLQKAAQM
401: GAVATSSSFL RGFGVMSSTS SSNGYQEWSG RPIDANGASY AAGLGLGLPC DGGSGLKELM LGTPSMFGPK HPTLDLLGLG MAASVGPSPG LSALITSMGS
501: NLDMVTSAGS FGTADFSGKD LGRNS

Best Arabidopsis Sequence Match ( AT5G66730.1 )
(BLAST)

001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS

Arabidopsis Description

IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.