Factsheet for PGSC0003DMT400021189

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g063040.2.1	Tomato	nucleus	92.73	92.93
KRH15560	Soybean	nucleus	39.96	45.83
VIT_04s0008g01160.t01	Wine grape	nucleus	50.21	44.68
KRH05443	Soybean	nucleus	40.6	43.18
PGSC0003DMT400006385	Potato	nucleus	48.5	41.96
PGSC0003DMT400012504	Potato	nucleus	44.23	41.24
PGSC0003DMT400004390	Potato	nucleus	38.89	39.91
PGSC0003DMT400063501	Potato	nucleus	30.34	39.44
PGSC0003DMT400049788	Potato	nucleus	39.74	38.99
PGSC0003DMT400020945	Potato	nucleus	41.03	38.32
PGSC0003DMT400024272	Potato	nucleus	39.96	37.78
PGSC0003DMT400027159	Potato	nucleus	39.1	37.2
PGSC0003DMT400013174	Potato	nucleus	38.89	35.97
PGSC0003DMT400033039	Potato	nucleus, plastid	39.32	35.05
PGSC0003DMT400075837	Potato	nucleus	38.68	34.94
PGSC0003DMT400029550	Potato	nucleus	33.33	34.44
PGSC0003DMT400008694	Potato	nucleus, plastid	38.68	34.28
PGSC0003DMT400069306	Potato	nucleus	25.43	28.95
PGSC0003DMT400079735	Potato	nucleus, plastid	26.28	28.15
PGSC0003DMT400040064	Potato	nucleus	36.97	23.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400021189	EnsemblPlantsGene:PGSC0003DMG400008205	EntrezGene:102591565	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF25
PFscan:PS50157	PGSC:PGSC0003DMG400008205	RefSeq:XP_006351575.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI0002957B6A	UniProt:M1AER7	MapMan:15.5.15	:	:

Description

C2H2L domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400008205]

Coordinates

chr8:+:35517211..35520484

Molecular Weight (calculated)

51827.5 Da

IEP (calculated)

8.723

GRAVY (calculated)

-0.768

Length

468 amino acids

Sequence
(BLAST)

001: MIKGMLGDDS MSNLTSASNE ASISSTNNRI EIGSVLYPQL QNIQTQPPPN KKKRNLPGNP DPEAEVVALS PRSLLATNRF VCEICNKGFQ RDQNLQLHRR
101: GHNLPWKLKQ RTNKEVKKKV YVCPEPSCVH HHPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT REYRCDCGTL FSRRDSFITH
201: RAFCDALTEE SSRTIIPPPN SSTSHHLNLH TLQNFQMKQE QQQSNDLSSQ LFIQNPNSNS NSSNNIFGAP PPHMSATALL QKAAQIGVTS SSHAANNMSA
301: NTFFSPTTST TTAMAMSGSG AGRGGGGDIA SCEYHPFENN NNNNNNTDFV TAGSTSFHDF GASVTPGFME QVHDMQNMMA TTAPSLPCTS FDEGFGRGAH
401: LMRQGKENNE GLTRDFLGLR AFPHHRDFLN TTTTPAALHY MGSSSSDALA SFDQHHHHQN QNQSPWQN

Best Arabidopsis Sequence Match ( AT1G55110.2 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.