Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc09g065670.2.1 | Tomato | nucleus | 91.82 | 93.19 |
KRH67268 | Soybean | nucleus | 34.59 | 63.22 |
GSMUA_Achr3P25410_001 | Banana | nucleus | 34.17 | 50.0 |
CDX97281 | Canola | nucleus, plastid | 39.41 | 48.83 |
AT4G02670.2 | Thale cress | nucleus, plastid | 40.67 | 48.02 |
Bra018535.1-P | Field mustard | plastid | 39.83 | 47.03 |
CDX91304 | Canola | nucleus, plastid | 39.41 | 46.53 |
GSMUA_Achr2P08910_001 | Banana | nucleus | 37.53 | 46.49 |
VIT_00s0179g00170.t01 | Wine grape | nucleus, plastid | 42.98 | 46.28 |
KRG95590 | Soybean | nucleus | 43.61 | 45.22 |
KRH71370 | Soybean | nucleus | 43.19 | 44.98 |
KRH32064 | Soybean | nucleus | 43.4 | 44.71 |
PGSC0003DMT400021189 | Potato | nucleus | 38.99 | 39.74 |
TraesCS6B01G154000.1 | Wheat | nucleus | 33.96 | 39.61 |
PGSC0003DMT400004390 | Potato | nucleus | 37.74 | 39.47 |
TraesCS6D01G116300.1 | Wheat | nucleus | 33.54 | 39.22 |
TraesCS6A01G126000.1 | Wheat | nucleus | 33.96 | 38.76 |
PGSC0003DMT400063501 | Potato | nucleus | 28.51 | 37.78 |
KXG38489 | Sorghum | nucleus | 32.7 | 36.45 |
PGSC0003DMT400006385 | Potato | nucleus | 41.3 | 36.41 |
PGSC0003DMT400024272 | Potato | nucleus | 37.53 | 36.16 |
Zm00001d032922_P001 | Maize | nucleus | 32.7 | 35.78 |
PGSC0003DMT400027159 | Potato | nucleus | 36.48 | 35.37 |
PGSC0003DMT400012504 | Potato | nucleus | 36.69 | 34.86 |
CDY67587 | Canola | cytosol, nucleus | 16.35 | 34.67 |
PGSC0003DMT400013174 | Potato | nucleus | 36.69 | 34.59 |
PGSC0003DMT400075837 | Potato | nucleus | 37.32 | 34.36 |
PGSC0003DMT400020945 | Potato | nucleus | 36.06 | 34.33 |
PGSC0003DMT400008694 | Potato | nucleus, plastid | 37.53 | 33.9 |
Os10t0419200-01 | Rice | nucleus | 33.75 | 33.89 |
PGSC0003DMT400033039 | Potato | nucleus, plastid | 37.11 | 33.71 |
PGSC0003DMT400029550 | Potato | nucleus | 31.03 | 32.67 |
PGSC0003DMT400069306 | Potato | nucleus | 23.69 | 27.49 |
PGSC0003DMT400079735 | Potato | nucleus, plastid | 24.53 | 26.77 |
PGSC0003DMT400040064 | Potato | nucleus | 36.48 | 23.64 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400049788 | EnsemblPlantsGene:PGSC0003DMG400019342 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF65 | PFscan:PS50157 |
PGSC:PGSC0003DMG400019342 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000296EF43 |
UniProt:M1BPB7 | MapMan:15.5.15 | : | : | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019342]
Coordinates
chr9:+:48481892..48487192
Molecular Weight (calculated)
52006.2 Da
IEP (calculated)
9.301
GRAVY (calculated)
-0.587
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQNMISNHN HHEQPQKIKK KRNLPGNPDP DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKENKKKAYV CPEPTCVHHH
101: PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KIYAVQSDWK AHSKTCGTKE YRCDCGTLFS RKDSFVTHRA FCDALAEESA RLSANSALMH RAAAASTIAN
201: SAAIAGEPNF HLDQSSLFPF PANQRHFANP PPPLPISAAA TAVTTHISLN PWDPQIPLNP NHTHEENHHQ IAHPVPIKTE SIHFPISPSL PFYHDQHYPV
301: FHRGSFSIPS PQLSATALLQ KAATMGTNST VNSTMAHLNR AALAHVTPNG FLSFGSENIP GNWKKRDNLT RDFLGLTGDH HHHDHDDSSS SAGGVGVGVG
401: VGGGGGGGQV MPHNGNVGNG LLLSYGGNRM QDFQQTLYER DNSVLKHHQL GFGFAAAAAA AGVGAAAEST TGTWGNC
101: PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KIYAVQSDWK AHSKTCGTKE YRCDCGTLFS RKDSFVTHRA FCDALAEESA RLSANSALMH RAAAASTIAN
201: SAAIAGEPNF HLDQSSLFPF PANQRHFANP PPPLPISAAA TAVTTHISLN PWDPQIPLNP NHTHEENHHQ IAHPVPIKTE SIHFPISPSL PFYHDQHYPV
301: FHRGSFSIPS PQLSATALLQ KAATMGTNST VNSTMAHLNR AALAHVTPNG FLSFGSENIP GNWKKRDNLT RDFLGLTGDH HHHDHDDSSS SAGGVGVGVG
401: VGGGGGGGQV MPHNGNVGNG LLLSYGGNRM QDFQQTLYER DNSVLKHHQL GFGFAAAAAA AGVGAAAEST TGTWGNC
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.