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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g065670.2.1 Tomato nucleus 91.82 93.19
KRH67268 Soybean nucleus 34.59 63.22
GSMUA_Achr3P25410_001 Banana nucleus 34.17 50.0
CDX97281 Canola nucleus, plastid 39.41 48.83
AT4G02670.2 Thale cress nucleus, plastid 40.67 48.02
Bra018535.1-P Field mustard plastid 39.83 47.03
CDX91304 Canola nucleus, plastid 39.41 46.53
GSMUA_Achr2P08910_001 Banana nucleus 37.53 46.49
VIT_00s0179g00170.t01 Wine grape nucleus, plastid 42.98 46.28
KRG95590 Soybean nucleus 43.61 45.22
KRH71370 Soybean nucleus 43.19 44.98
KRH32064 Soybean nucleus 43.4 44.71
PGSC0003DMT400021189 Potato nucleus 38.99 39.74
TraesCS6B01G154000.1 Wheat nucleus 33.96 39.61
PGSC0003DMT400004390 Potato nucleus 37.74 39.47
TraesCS6D01G116300.1 Wheat nucleus 33.54 39.22
TraesCS6A01G126000.1 Wheat nucleus 33.96 38.76
PGSC0003DMT400063501 Potato nucleus 28.51 37.78
KXG38489 Sorghum nucleus 32.7 36.45
PGSC0003DMT400006385 Potato nucleus 41.3 36.41
PGSC0003DMT400024272 Potato nucleus 37.53 36.16
Zm00001d032922_P001 Maize nucleus 32.7 35.78
PGSC0003DMT400027159 Potato nucleus 36.48 35.37
PGSC0003DMT400012504 Potato nucleus 36.69 34.86
CDY67587 Canola cytosol, nucleus 16.35 34.67
PGSC0003DMT400013174 Potato nucleus 36.69 34.59
PGSC0003DMT400075837 Potato nucleus 37.32 34.36
PGSC0003DMT400020945 Potato nucleus 36.06 34.33
PGSC0003DMT400008694 Potato nucleus, plastid 37.53 33.9
Os10t0419200-01 Rice nucleus 33.75 33.89
PGSC0003DMT400033039 Potato nucleus, plastid 37.11 33.71
PGSC0003DMT400029550 Potato nucleus 31.03 32.67
PGSC0003DMT400069306 Potato nucleus 23.69 27.49
PGSC0003DMT400079735 Potato nucleus, plastid 24.53 26.77
PGSC0003DMT400040064 Potato nucleus 36.48 23.64
Protein Annotations
EnsemblPlants:PGSC0003DMT400049788EnsemblPlantsGene:PGSC0003DMG400019342Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typePANTHER:PTHR10593PANTHER:PTHR10593:SF65PFscan:PS50157
PGSC:PGSC0003DMG400019342ScanProsite:PS00028SEG:segSMART:SM00355SUPFAM:SSF57667UniParc:UPI000296EF43
UniProt:M1BPB7MapMan:15.5.15::::
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019342]
Coordinates
chr9:+:48481892..48487192
Molecular Weight (calculated)
52006.2 Da
IEP (calculated)
9.301
GRAVY (calculated)
-0.587
Length
477 amino acids
Sequence
(BLAST)
001: MAQNMISNHN HHEQPQKIKK KRNLPGNPDP DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKENKKKAYV CPEPTCVHHH
101: PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KIYAVQSDWK AHSKTCGTKE YRCDCGTLFS RKDSFVTHRA FCDALAEESA RLSANSALMH RAAAASTIAN
201: SAAIAGEPNF HLDQSSLFPF PANQRHFANP PPPLPISAAA TAVTTHISLN PWDPQIPLNP NHTHEENHHQ IAHPVPIKTE SIHFPISPSL PFYHDQHYPV
301: FHRGSFSIPS PQLSATALLQ KAATMGTNST VNSTMAHLNR AALAHVTPNG FLSFGSENIP GNWKKRDNLT RDFLGLTGDH HHHDHDDSSS SAGGVGVGVG
401: VGGGGGGGQV MPHNGNVGNG LLLSYGGNRM QDFQQTLYER DNSVLKHHQL GFGFAAAAAA AGVGAAAEST TGTWGNC
Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.