Factsheet for Os10t0419200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18725639
nucleus: 24280027

gfp PMID: 18725639 doi

C Wu, C You, C Li, T Long, G Chen, ME Byrne, Q Zhang

National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China.

gfp PMID: 24280027 doi

S Hu, G Dong, J Xu, Y Su, Z Shi, W Ye, Y Li, G Li, B Zhang, J Hu, Q Qian, D Zeng, L Guo

State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310006, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G116300.1	Wheat	nucleus	62.11	72.3
TraesCS6A01G126000.1	Wheat	nucleus	63.16	71.77
TraesCS6B01G154000.1	Wheat	nucleus	60.84	70.66
KRH67268	Soybean	nucleus	30.74	55.94
GSMUA_Achr3P25410_001	Banana	nucleus	35.16	51.23
GSMUA_Achr2P08910_001	Banana	nucleus	40.63	50.13
KXG38489	Sorghum	nucleus	39.79	44.16
Zm00001d032922_P001	Maize	nucleus	38.74	42.2
Os01t0242200-01	Rice	nucleus	34.32	39.28
CDX97281	Canola	nucleus, plastid	31.58	38.96
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	34.95	37.47
AT4G02670.2	Thale cress	nucleus, plastid	31.79	37.38
CDX91304	Canola	nucleus, plastid	31.79	37.38
Bra018535.1-P	Field mustard	plastid	31.58	37.13
KRG95590	Soybean	nucleus	35.79	36.96
KRH32064	Soybean	nucleus	34.11	34.99
Os01t0195000-01	Rice	nucleus	35.58	34.7
KRH71370	Soybean	nucleus	33.05	34.28
PGSC0003DMT400049788	Potato	nucleus	33.89	33.75
Solyc09g065670.2.1	Tomato	nucleus	33.26	33.62
Os01t0935000-01	Rice	nucleus	33.05	32.98
Os03t0197800-00	Rice	nucleus	36.0	30.98
Os09t0555700-02	Rice	nucleus	34.11	30.28
Os02t0518500-00	Rice	nucleus	30.53	29.47
Os08t0554400-02	Rice	nucleus	32.84	28.47
Os01t0572300-01	Rice	nucleus	32.0	28.31
Os02t0672100-01	Rice	nucleus	36.21	27.97
Os04t0566400-02	Rice	nucleus	35.58	27.57
Os03t0237250-01	Rice	plastid	24.84	26.94
Os07t0581366-00	Rice	cytosol, nucleus	32.0	23.97
CDY67587	Canola	cytosol, nucleus	10.53	22.22
Os08t0467100-01	Rice	nucleus	24.21	21.58

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:4348644	EMBL:AB359196	ProteinID:ACH87395.1	UniProt:B1B534
ProteinID:BAG12102.1	ProteinID:BAT10873.1	EMBL:FJ009578	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013087	EnsemblPlantsGene:Os10g0419200	EnsemblPlants:Os10t0419200-01	PFAM:PF12874	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF46	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00016601E6
RefSeq:XP_015614407.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

EARLY HEADING DATE 2Cys2/His2-type zinc finger transcription factor, Heading date (Os10t0419200-01)

Coordinates

chr10:-:14739603..14743098

Molecular Weight (calculated)

50674.5 Da

IEP (calculated)

7.816

GRAVY (calculated)

-0.343

Length

475 amino acids

Sequence
(BLAST)

001: MLLSDLSSDQ EATGSNSHGG GGGDRMVVGS HGAAHVVLSN LFLPPAAAAA ATMLLPAAPV MVRPAAMAAA QEPRAKKKRS LPGNPDPEAE VIALSPRALV
101: ATNRFVCEVC NKGFQRDQNL QLHRRGHNLP WKLRHRAAAV SAVTTAAPAP RKRVYVCPEP TCVHHDPARA LGDLTGIKKH FSRKHGEKRW RCERCGKRYA
201: VHSDWKAHVK NCGTREYRCD CGILFSRKDS LLTHRAFCDA LAEESARLLA AANNSSSITT TTCNNSNISS NNNNNNINSI SNSNNLLITS SSSSPPLFLP
301: FSTTPAENPN PNQLLFLQQH QAAHHQLLLP QFQQPPSSPP AYFDHLAFGG GGGVITGSSC NDDNSSIAGD VMVAAGGDSV SFGLTSEGSV TMHAGDVGRR
401: RLTRDFLGVD HDAGEVDELE LDELPADLST TAAACQGCNF AAATTAACCA TDFTTGSRQY LGRLPPVNET WSHNF

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.