Factsheet for GSMUA_Achr3P25410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P08910_001	Banana	nucleus	78.22	66.23
KRH67268	Soybean	nucleus	46.63	58.24
GSMUA_Achr2P08460_001	Banana	nucleus	46.93	48.57
GSMUA_Achr7P14780_001	Banana	nucleus	50.31	45.94
GSMUA_Achr7P13540_001	Banana	nucleus	49.69	44.38
GSMUA_Achr2P16690_001	Banana	nucleus	49.39	43.75
GSMUA_Achr5P22140_001	Banana	nucleus	48.77	41.73
GSMUA_Achr9P06650_001	Banana	nucleus	46.93	41.69
TraesCS6D01G116300.1	Wheat	nucleus	52.15	41.67
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	46.32	41.48
TraesCS6B01G154000.1	Wheat	nucleus	51.84	41.32
CDX97281	Canola	nucleus, plastid	48.47	41.04
TraesCS6A01G126000.1	Wheat	nucleus	52.15	40.67
GSMUA_Achr7P22720_001	Banana	mitochondrion	34.36	39.86
GSMUA_Achr7P09150_001	Banana	nucleus	50.0	39.76
Bra018535.1-P	Field mustard	plastid	48.77	39.36
GSMUA_Achr6P27030_001	Banana	nucleus	42.64	39.27
CDX91304	Canola	nucleus, plastid	48.16	38.86
AT4G02670.2	Thale cress	nucleus, plastid	48.16	38.86
GSMUA_Achr10P...	Banana	nucleus	53.07	38.53
GSMUA_Achr10P...	Banana	nucleus	44.48	38.46
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	50.61	37.25
GSMUA_Achr3P13990_001	Banana	nucleus	48.47	37.09
GSMUA_Achr11P...	Banana	nucleus	46.93	36.96
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	44.48	36.43
KRG95590	Soybean	nucleus	51.23	36.3
KRH32064	Soybean	nucleus	50.92	35.85
KXG38489	Sorghum	nucleus	46.63	35.51
KRH71370	Soybean	nucleus	49.69	35.37
Os10t0419200-01	Rice	nucleus	51.23	35.16
Solyc09g065670.2.1	Tomato	nucleus	50.61	35.11
GSMUA_Achr8P10040_001	Banana	nucleus	47.85	34.9
Zm00001d032922_P001	Maize	nucleus	46.63	34.86
GSMUA_Achr5P06450_001	Banana	nucleus	50.31	34.45
GSMUA_Achr1P07110_001	Banana	nucleus	51.23	34.36
GSMUA_Achr1P17940_001	Banana	nucleus	49.08	34.26
PGSC0003DMT400049788	Potato	nucleus	50.0	34.17
GSMUA_Achr9P23870_001	Banana	nucleus	44.48	33.41
GSMUA_Achr10P...	Banana	nucleus	47.85	32.57
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	48.77	32.45
GSMUA_Achr7P24170_001	Banana	nucleus	49.08	31.87
GSMUA_Achr11P...	Banana	nucleus	51.84	31.71
GSMUA_Achr4P04310_001	Banana	nucleus	45.71	31.5
GSMUA_Achr11P...	Banana	nucleus	49.08	31.31
GSMUA_Achr4P14030_001	Banana	nucleus	51.84	31.12
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	45.71	30.47
GSMUA_Achr4P05240_001	Banana	nucleus	46.01	30.0
GSMUA_Achr4P07200_001	Banana	nucleus	48.77	29.44
GSMUA_Achr3P29940_001	Banana	nucleus	52.45	29.43
GSMUA_Achr7P18610_001	Banana	nucleus	34.05	29.37
GSMUA_Achr1P02080_001	Banana	nucleus	48.77	29.07
GSMUA_Achr10P...	Banana	nucleus	33.74	28.72
GSMUA_Achr7P25960_001	Banana	nucleus	52.15	28.72
GSMUA_Achr5P23130_001	Banana	nucleus	33.13	28.42
GSMUA_Achr6P02490_001	Banana	nucleus	31.9	28.11
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	32.52	27.68
GSMUA_Achr11P...	Banana	nucleus	46.63	26.86
GSMUA_Achr10P...	Banana	nucleus	32.21	26.32
GSMUA_Achr3P20220_001	Banana	nucleus	33.74	25.94
CDY67587	Canola	cytosol, nucleus	15.95	23.11
GSMUA_AchrUn_...	Banana	nucleus	50.61	18.56

Protein Annotations

EnsemblPlants:GSMUA_Achr3P25410_001	EnsemblPlants:GSMUA_Achr3T25410_001	EnsemblPlantsGene:GSMUA_Achr3G25410_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
PANTHER:PTHR10593	PANTHER:PTHR10593:SF49	PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00029540FC	UniProt:M0SHQ7	MapMan:15.5.15	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G25410_001]

Coordinates

chr3:-:25626308..25628091

Molecular Weight (calculated)

36037.9 Da

IEP (calculated)

9.550

GRAVY (calculated)

-0.572

Length

326 amino acids

Sequence
(BLAST)

001: MSNSTSISDE ASVSSETRAH GHFSLSSMLT SVSPHHHRPQ PPPKAKKKRS QPGNPDPEAE VVALSPTTLM ATNRFICEIC NKGFKREQNL QLHRRGHNLP
101: WKLRQRGSEE VARKRVYVCP EPSCVHHHPS RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVNSDWKAH VKTCGAREYR CDCGTLFSRK DTFITHRAFC
201: DALAEESARL MAATATTFPP LHQPLFHPSS SWNPLICPNP DLTLNPSSDG DLGALQVKPE DKLSSLHHIH LRAITSPHLS ATALLQRASI MGPMSFTNTA
301: SSVGYDGAMS GGVVSSGVDV QDLPMW

Best Arabidopsis Sequence Match ( AT1G55110.1 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.