Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049788 | Potato | nucleus | 93.19 | 91.82 |
| KRH67268 | Soybean | nucleus | 34.04 | 61.3 |
| GSMUA_Achr3P25410_001 | Banana | nucleus | 35.11 | 50.61 |
| CDX97281 | Canola | nucleus, plastid | 39.79 | 48.57 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 40.64 | 47.28 |
| GSMUA_Achr2P08910_001 | Banana | nucleus | 38.51 | 47.01 |
| Bra018535.1-P | Field mustard | plastid | 40.21 | 46.78 |
| CDX91304 | Canola | nucleus, plastid | 39.79 | 46.29 |
| VIT_00s0179g00170.t01 | Wine grape | nucleus, plastid | 42.55 | 45.15 |
| KRH71370 | Soybean | nucleus | 42.55 | 43.67 |
| KRG95590 | Soybean | nucleus | 42.55 | 43.48 |
| KRH32064 | Soybean | nucleus | 42.55 | 43.2 |
| TraesCS6D01G116300.1 | Wheat | nucleus | 34.26 | 39.46 |
| TraesCS6B01G154000.1 | Wheat | nucleus | 34.04 | 39.12 |
| Solyc08g063040.2.1 | Tomato | nucleus | 38.51 | 38.76 |
| TraesCS6A01G126000.1 | Wheat | nucleus | 34.47 | 38.76 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 36.6 | 37.47 |
| Solyc01g099340.2.1 | Tomato | nucleus | 33.4 | 37.03 |
| KXG38489 | Sorghum | nucleus | 32.55 | 35.75 |
| Solyc03g121660.2.1 | Tomato | nucleus | 40.64 | 35.24 |
| Solyc11g069240.1.1 | Tomato | nucleus | 33.62 | 35.19 |
| Zm00001d032922_P001 | Maize | nucleus | 32.55 | 35.09 |
| Solyc07g053570.2.1 | Tomato | nucleus | 37.45 | 35.06 |
| Solyc10g084180.1.1 | Tomato | nucleus | 36.17 | 34.48 |
| CDY67587 | Canola | cytosol, nucleus | 16.38 | 34.22 |
| Solyc04g080130.2.1 | Tomato | nucleus | 36.38 | 34.13 |
| Solyc06g062670.2.1 | Tomato | nucleus | 36.38 | 34.0 |
| Os10t0419200-01 | Rice | nucleus | 33.62 | 33.26 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 37.23 | 33.14 |
| Solyc04g008500.2.1 | Tomato | nucleus | 36.17 | 32.88 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 35.96 | 32.5 |
| Solyc01g005060.2.1 | Tomato | nucleus | 23.19 | 32.15 |
| Solyc06g072360.2.1 | Tomato | nucleus | 23.62 | 28.32 |
| Solyc05g054030.2.1 | Tomato | nucleus | 22.34 | 27.56 |
| Solyc02g062940.2.1 | Tomato | nucleus | 36.6 | 26.22 |
| Solyc03g098070.2.1 | Tomato | nucleus | 16.38 | 21.15 |
Protein Annotations
| EnsemblPlants:Solyc09g065670.2.1 | EnsemblPlantsGene:Solyc09g065670.2 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF65 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000276C929 | UniProt:K4CUJ3 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:63900338..63905236
Molecular Weight (calculated)
51505.3 Da
IEP (calculated)
8.917
GRAVY (calculated)
-0.672
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSNHNHHEQ PPKIKKKRNL PGNPDPDAEV VALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTNKEN KKKAYVCPEP TCVHHHPSRA
101: LGDLTGIKKH FCRKHGEKKW KCDKCSKIYA VQSDWKAHSK TCGTKEYRCD CGTLFARKDS FVTHRAFCDA LAEESARLSA NSGLMHRAAA TSTIANSAAI
201: ADEPNFHLDQ SSVFPFPANQ RHFANPPPPQ LPISAAATGV TTHISLNPWE PQIPLNPNHT HEENHHQITH PVPIKTESIH FPISSSLPFY HDQHYPVFHR
301: GSFSIPSPQL AATALLQRAT TMGTNSTVNH VNSTMAHLNR GTLTHVTPNG FLSFGSENIP GNWQKRDNLT RDFLGLTGDH HHHHDHDDSS SSAGGVGGGG
401: GGGQVLPTNG NVGNGLLLSY GGNRMQDFQQ TLYERDNSVL KHHPLGFGFA GAGAGAGAAA DSTTGTWGDC
101: LGDLTGIKKH FCRKHGEKKW KCDKCSKIYA VQSDWKAHSK TCGTKEYRCD CGTLFARKDS FVTHRAFCDA LAEESARLSA NSGLMHRAAA TSTIANSAAI
201: ADEPNFHLDQ SSVFPFPANQ RHFANPPPPQ LPISAAATGV TTHISLNPWE PQIPLNPNHT HEENHHQITH PVPIKTESIH FPISSSLPFY HDQHYPVFHR
301: GSFSIPSPQL AATALLQRAT TMGTNSTVNH VNSTMAHLNR GTLTHVTPNG FLSFGSENIP GNWQKRDNLT RDFLGLTGDH HHHHDHDDSS SSAGGVGGGG
401: GGGQVLPTNG NVGNGLLLSY GGNRMQDFQQ TLYERDNSVL KHHPLGFGFA GAGAGAGAAA DSTTGTWGDC
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.