Factsheet for Solyc02g062940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040064	Potato	nucleus	95.88	85.46
VIT_04s0023g01430.t01	Wine grape	nucleus	47.87	62.06
KRH76829	Soybean	nucleus	46.49	58.99
KRH08298	Soybean	nucleus	45.27	58.12
KRH69942	Soybean	nucleus	45.27	56.57
KRH69941	Soybean	nucleus, plastid	45.27	56.57
CDX77936	Canola	nucleus	37.35	56.19
CDY24490	Canola	nucleus	37.2	56.09
Bra036098.1-P	Field mustard	nucleus, plastid	37.2	55.96
AT3G50700.1	Thale cress	nucleus	37.8	54.87
CDY67009	Canola	nucleus	39.18	53.99
AT5G66730.1	Thale cress	nucleus	41.01	53.8
CDX81372	Canola	nucleus	39.63	53.17
Bra037151.1-P	Field mustard	nucleus	39.63	52.85
CDY57128	Canola	nucleus	39.33	52.44
GSMUA_Achr4P14030_001	Banana	nucleus	37.65	45.49
TraesCS4A01G041400.1	Wheat	nucleus	33.08	44.56
Solyc04g080130.2.1	Tomato	nucleus	33.54	43.91
EER95332	Sorghum	nucleus	35.06	43.81
GSMUA_Achr7P25960_001	Banana	nucleus	39.33	43.58
GSMUA_Achr3P29940_001	Banana	nucleus	38.26	43.2
Zm00001d028139_P001	Maize	nucleus	35.37	43.04
TraesCS4B01G262400.1	Wheat	nucleus	34.6	42.99
Os03t0197800-00	Rice	nucleus	35.98	42.75
TraesCS4D01G262500.1	Wheat	nucleus	34.15	42.59
HORVU4Hr1G070950.8	Barley	nucleus	34.3	41.98
GSMUA_Achr4P07200_001	Banana	nucleus	34.45	41.85
Solyc01g099340.2.1	Tomato	nucleus	25.3	39.15
Solyc11g069240.1.1	Tomato	nucleus	25.61	37.42
Solyc08g063040.2.1	Tomato	nucleus	26.52	37.26
Solyc09g007550.2.1	Tomato	nucleus, plastid	26.07	37.25
Solyc09g065670.2.1	Tomato	nucleus	26.22	36.6
Solyc09g074780.2.1	Tomato	nucleus, plastid	28.96	36.54
Solyc07g053570.2.1	Tomato	nucleus	27.44	35.86
Solyc10g084180.1.1	Tomato	nucleus	26.52	35.29
Solyc03g121660.2.1	Tomato	nucleus	28.96	35.06
Solyc01g005060.2.1	Tomato	nucleus	17.84	34.51
Solyc06g062670.2.1	Tomato	nucleus	26.37	34.39
Solyc06g075250.2.1	Tomato	nucleus, plastid	27.13	33.71
Solyc04g008500.2.1	Tomato	nucleus	26.07	33.08
Solyc06g072360.2.1	Tomato	nucleus	19.21	32.14
Solyc05g054030.2.1	Tomato	nucleus	17.07	29.4
Solyc03g098070.2.1	Tomato	nucleus	15.55	28.02

Protein Annotations

EnsemblPlants:Solyc02g062940.2.1	EnsemblPlantsGene:Solyc02g062940.2	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF20	PFAM:PF12874
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002768468
UniProt:K4B6I2	MapMan:15.5.15	:	:	:	:

Description

No Description!

Coordinates

chr2:+:34884061..34887078

Molecular Weight (calculated)

68011.1 Da

IEP (calculated)

7.992

GRAVY (calculated)

-0.340

Length

656 amino acids

Sequence
(BLAST)

001: MNDCVGSGEV SVLSSGDQTA PCKEAAKKKR NLPGMPDPNA EVVALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVRKRVYVCP
101: ETTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH LKICGTKEYK CDCGTMFSRR DSFITHRAFC DVLAKDTEKA QNAVTTPIAE
201: EDLKVQVDVS STPQTPRTPP PSSEPPAVPS PAAPEPLPPP GSPSTAVVSS DSPIQHPESP HTNSNGTITK HDIEETTAKS RLSGICSSSS CTGCTNSNCF
301: TSLTGICSSS WSSSSNGSTS NSSIFSSLTG ICSSTRSSSS NGSTGSISVF PSLSGICSNS RSSSSNGSTQ SSSIFSSSTG ICSSSIFPSS TGICSGSSIF
401: ASSTGIYSNS SSLSSNRSTS GSSIFTSLTG ICSSSSNSSS NSTFASLFAS STASGSLPSQ APQFTDWFQS VAPSPPPDIE PPSSMEPISL CLAMNHGSSV
501: FGSTGQERMQ YAAAPQPSMS ATALLQKAAQ MGATATNSSL LRGLGILSSS SSSSGQHEWN GRQIDTDGAT LAAGLGLGLP CDDGSGLKEL MLGTPSVFGP
601: KHPTLDLLGL GMAAGGGSTP GLSALITSMG GNLDVAAAAR PFDSGEFCGK EFGRSS

Best Arabidopsis Sequence Match ( AT5G66730.1 )
(BLAST)

001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS

Arabidopsis Description

IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.