Factsheet for Bra036098.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77936	Canola	nucleus	98.62	98.62
AT3G50700.1	Thale cress	nucleus	83.49	80.53
Bra036013.1-P	Field mustard	nucleus	24.54	67.72
Bra037151.1-P	Field mustard	nucleus	71.56	63.41
VIT_04s0023g01430.t01	Wine grape	nucleus	62.16	53.56
KRH76829	Soybean	nucleus	61.47	51.84
KRH08298	Soybean	nucleus	58.26	49.71
KRH69942	Soybean	nucleus	58.26	48.38
KRH69941	Soybean	nucleus, plastid	58.26	48.38
PGSC0003DMT400033039	Potato	nucleus, plastid	56.65	47.05
Bra018535.1-P	Field mustard	plastid	38.76	41.83
TraesCS4A01G041400.1	Wheat	nucleus	45.64	40.86
Bra030886.1-P	Field mustard	nucleus	40.83	40.73
TraesCS4B01G262400.1	Wheat	nucleus	49.31	40.72
TraesCS4D01G262500.1	Wheat	nucleus	48.62	40.3
HORVU4Hr1G070950.8	Barley	nucleus	49.31	40.11
EER95332	Sorghum	nucleus	48.17	40.0
GSMUA_Achr4P14030_001	Banana	nucleus	49.31	39.59
Zm00001d028139_P001	Maize	nucleus	48.62	39.33
Bra033840.1-P	Field mustard	nucleus	40.6	39.07
Bra033724.1-P	Field mustard	nucleus	41.28	38.79
GSMUA_Achr3P29940_001	Banana	nucleus	51.38	38.55
Bra032541.1-P	Field mustard	nucleus	43.12	38.37
Bra015271.1-P	Field mustard	nucleus	42.2	38.17
Os03t0197800-00	Rice	nucleus	47.94	37.86
GSMUA_Achr4P07200_001	Banana	nucleus	46.56	37.59
GSMUA_Achr7P25960_001	Banana	nucleus	50.92	37.5
Solyc02g062940.2.1	Tomato	nucleus	55.96	37.2
Bra005741.1-P	Field mustard	nucleus	41.51	35.91
Bra021510.1-P	Field mustard	nucleus	41.51	35.49
Bra027394.1-P	Field mustard	nucleus	40.83	35.25
Bra026204.1-P	Field mustard	nucleus, plastid	36.24	35.11
Bra009549.1-P	Field mustard	nucleus	41.51	35.08
Bra026819.1-P	Field mustard	nucleus	36.93	34.48
Bra026203.1-P	Field mustard	nucleus, plastid	36.01	33.84
Bra001523.1-P	Field mustard	nucleus	39.68	33.79
Bra024833.1-P	Field mustard	plastid	39.22	33.33
Bra026616.1-P	Field mustard	nucleus	38.99	33.27
Bra024834.1-P	Field mustard	nucleus, plastid	41.74	32.97
PGSC0003DMT400040064	Potato	nucleus	55.5	32.88
Bra026617.1-P	Field mustard	nucleus	42.2	31.19
Bra040974.1-P	Field mustard	nucleus, plastid	41.74	31.11
Bra010981.1-P	Field mustard	nucleus	25.92	29.89
Bra024771.1-P	Field mustard	nucleus	26.15	29.77
Bra023223.1-P	Field mustard	plastid	32.11	29.17
Bra026624.1-P	Field mustard	nucleus	28.44	28.31
Bra004283.1-P	Field mustard	nucleus	26.61	28.16
Bra024841.1-P	Field mustard	nucleus	28.67	28.15
Bra004050.1-P	Field mustard	nucleus	26.38	27.84
Bra017432.1-P	Field mustard	nucleus	27.98	27.73
Bra038293.1-P	Field mustard	nucleus	41.05	20.2

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra036098	EnsemblPlants:Bra036098.1	EnsemblPlants:Bra036098.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	UniProt:M4F4U4	PFAM:PF00096	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF20	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002542BEB
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

AT3G50700 (E=1e-165) AtIDD2 | AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA09:+:25318650..25320394

Molecular Weight (calculated)

46343.2 Da

IEP (calculated)

9.883

GRAVY (calculated)

-0.472

Length

436 amino acids

Sequence
(BLAST)

001: MPVDLDKSST VSGEASVSST GNQQNPLPKS AAKKKRNLPG MPDPNSEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQKSSQEVKK
101: KVYVCPETSC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVV SDWKAHSKIC GTKEYKCDCG TLFSRRDSFM THRAFCDALA EESVRSHTHG
201: KKQSPEILTR KKPVPDPKPS LAAAPVETQP AIAIKRPESP KTPREVLQET QEPTGLNGVY FDSSSASPSI YASSCSQSLF APSSSIEPIS LGLSTSHGPS
301: FLCSPRFPSQ PAMSATALLQ KAAQMGAASS GGSLLRGLGI VSSTSPSMDS IVPNGLALGL PCGGESSSGL KELMMGNSSV FGPKQTTLDF LGLGRAVGNG
401: GGPGSTLAGP RGGSIDALAT FGSGEFSGND IGRRTS

Best Arabidopsis Sequence Match ( AT3G50700.1 )
(BLAST)

001: MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK
101: KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS
201: QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI
301: EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT
401: TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS

Arabidopsis Description

IDD2Protein indeterminate-domain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.