Factsheet for Bra027394.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97521	Canola	nucleus	94.85	98.76
Bra021510.1-P	Field mustard	nucleus	86.73	85.88
Bra001523.1-P	Field mustard	nucleus	85.15	83.98
AT3G13810.2	Thale cress	nucleus	80.2	78.79
Bra036013.1-P	Field mustard	nucleus	21.39	68.35
Bra030886.1-P	Field mustard	nucleus	58.22	67.28
Bra018535.1-P	Field mustard	plastid	35.45	44.31
Bra036098.1-P	Field mustard	nucleus, plastid	35.25	40.83
Bra015271.1-P	Field mustard	nucleus	38.22	40.04
Bra032541.1-P	Field mustard	nucleus	38.42	39.59
Bra033724.1-P	Field mustard	nucleus	36.24	39.44
Bra033840.1-P	Field mustard	nucleus	34.06	37.97
VIT_09s0002g02300.t01	Wine grape	nucleus	39.8	37.78
Bra005741.1-P	Field mustard	nucleus	37.43	37.5
Bra037151.1-P	Field mustard	nucleus	36.44	37.4
Bra009549.1-P	Field mustard	nucleus	37.03	36.24
Bra026819.1-P	Field mustard	nucleus	32.67	35.33
Bra024834.1-P	Field mustard	nucleus, plastid	38.42	35.14
Bra024833.1-P	Field mustard	plastid	35.64	35.09
Bra026616.1-P	Field mustard	nucleus	35.45	35.03
Bra026204.1-P	Field mustard	nucleus, plastid	30.1	33.78
Bra026617.1-P	Field mustard	nucleus	38.61	33.05
Bra040974.1-P	Field mustard	nucleus, plastid	38.02	32.82
Bra026203.1-P	Field mustard	nucleus, plastid	29.5	32.11
Bra023223.1-P	Field mustard	plastid	27.52	28.96
Bra024771.1-P	Field mustard	nucleus	21.58	28.46
Bra010981.1-P	Field mustard	nucleus	20.79	27.78
Bra004283.1-P	Field mustard	nucleus	21.98	26.94
Bra004050.1-P	Field mustard	nucleus	21.98	26.88
Bra026624.1-P	Field mustard	nucleus	22.77	26.26
Bra024841.1-P	Field mustard	nucleus	22.97	26.13
Bra017432.1-P	Field mustard	nucleus	22.57	25.91
Bra038293.1-P	Field mustard	nucleus	33.27	18.96

Protein Annotations

EnsemblPlants:Bra027394.1	EnsemblPlants:Bra027394.1-P	EnsemblPlantsGene:Bra027394	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF49
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002547EC9
UniProt:M4EF32	MapMan:15.5.15	:	:	:	:

Description

AT3G13810 (E=2e-185) AtIDD11 | AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA05:-:20685863..20688956

Molecular Weight (calculated)

56155.2 Da

IEP (calculated)

8.180

GRAVY (calculated)

-0.909

Length

505 amino acids

Sequence
(BLAST)

001: MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFFV PEPQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI
101: CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDCKA HSKTCGTKEY
201: RCDCGTLFSR RDSYITHRAF CLALAEETAR EVVTPQDQNH QPNPLMIHQS SHHHHQAQPN MNISSSSSSS HNIINTLHFE TNVNVTNNCE SSSNHPHTFP
301: MKIEQQQTGD QIINYHHHGV PPWLAPQPQD RTSSNPNPSN GGGGGGGLFS LAASPVMSAT ALLQKAAQMG STRTTPLPPT TDFERSHNTL TTTMASMMTS
401: PSGFISSNNN NQVLFQDYNA SGFNHHHGGG EAFDNTFSEL FRTNADTTSD KNKSGEGGGG REGLTRDFLG LRPLMSHNEI LSFAGLGNCI NDAASDQLHP
501: KPWQG

Best Arabidopsis Sequence Match ( AT3G13810.4 )
(BLAST)

001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG

Arabidopsis Description

AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.