Factsheet for Bra026203.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45271	Canola	nucleus	87.72	97.84
Bra026204.1-P	Field mustard	nucleus, plastid	83.41	86.0
Bra036013.1-P	Field mustard	nucleus	20.91	61.39
KRG89168	Soybean	nucleus, plastid	33.84	45.11
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	33.62	42.86
GSMUA_Achr3P13990_001	Banana	nucleus	34.48	37.56
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	32.11	37.44
GSMUA_Achr1P17940_001	Banana	nucleus	37.28	37.05
Bra026819.1-P	Field mustard	nucleus	37.28	37.05
Bra023223.1-P	Field mustard	plastid	37.72	36.46
GSMUA_Achr9P23870_001	Banana	nucleus	34.05	36.41
GSMUA_Achr1P07110_001	Banana	nucleus	37.93	36.21
Bra036098.1-P	Field mustard	nucleus, plastid	33.84	36.01
GSMUA_Achr10P...	Banana	nucleus	36.21	35.07
AT1G14580.3	Thale cress	nucleus	36.21	34.93
Bra018535.1-P	Field mustard	plastid	30.17	34.65
PGSC0003DMT400075837	Potato	nucleus	38.58	34.56
Solyc04g008500.2.1	Tomato	nucleus	37.5	33.66
GSMUA_Achr4P04310_001	Banana	nucleus	34.27	33.62
Bra033840.1-P	Field mustard	nucleus	32.76	33.55
KRH49485	Soybean	nucleus	39.22	33.52
KRG90705	Soybean	nucleus	40.95	33.51
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	35.34	33.47
KRH36039	Soybean	nucleus	41.16	33.45
KRG89167	Soybean	nucleus, plastid	39.44	33.33
KRG91985	Soybean	nucleus	39.87	33.04
KRH34792	Soybean	nucleus	39.44	32.97
KRH49489	Soybean	nucleus, plastid	37.72	32.83
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	34.27	32.52
Bra030886.1-P	Field mustard	nucleus	30.6	32.49
Bra026616.1-P	Field mustard	nucleus	35.56	32.29
VIT_01s0010g02100.t01	Wine grape	nucleus	39.66	32.17
Bra024833.1-P	Field mustard	plastid	35.56	32.16
Bra033724.1-P	Field mustard	nucleus	32.11	32.11
Zm00001d021403_P001	Maize	nucleus	33.41	32.02
GSMUA_Achr11P...	Banana	nucleus	36.64	31.89
GSMUA_Achr11P...	Banana	nucleus	34.7	31.51
GSMUA_Achr4P05240_001	Banana	nucleus	33.84	31.4
OQU89911	Sorghum	nucleus, plastid	35.99	31.33
Bra037151.1-P	Field mustard	nucleus	33.19	31.3
Os09t0555700-02	Rice	nucleus	35.99	31.21
TraesCS5A01G356100.1	Wheat	nucleus, plastid	36.64	31.19
TraesCS5B01G358600.1	Wheat	nucleus, plastid	36.64	31.14
Bra015271.1-P	Field mustard	nucleus	32.11	30.91
TraesCS5D01G364900.1	Wheat	nucleus, plastid	36.42	30.9
GSMUA_Achr1P02080_001	Banana	nucleus	36.21	30.71
Bra032541.1-P	Field mustard	nucleus	32.11	30.41
Bra021510.1-P	Field mustard	nucleus	32.97	30.0
Bra005741.1-P	Field mustard	nucleus	32.54	29.96
Os08t0554400-02	Rice	nucleus	35.34	29.93
KXG25416	Sorghum	nucleus	35.56	29.84
Bra027394.1-P	Field mustard	nucleus	32.11	29.5
Bra024834.1-P	Field mustard	nucleus, plastid	34.7	29.17
Bra009549.1-P	Field mustard	nucleus	32.11	28.88
GSMUA_Achr11P...	Banana	nucleus	35.13	28.8
EES11271	Sorghum	nucleus	37.07	28.71
Zm00001d017560_P001	Maize	nucleus	35.78	28.52
KXG31026	Sorghum	nucleus	36.21	28.24
Zm00001d026113_P006	Maize	nucleus	36.42	28.21
TraesCS6B01G271000.1	Wheat	nucleus	34.91	28.12
Bra001523.1-P	Field mustard	nucleus	31.03	28.12
TraesCS6D01G235800.1	Wheat	nucleus	34.91	28.03
TraesCS6A01G254500.1	Wheat	nucleus	34.91	28.03
TraesCS2B01G421100.1	Wheat	nucleus	36.85	27.94
Bra026617.1-P	Field mustard	nucleus	35.34	27.8
Os04t0566400-02	Rice	nucleus	36.21	27.41
Bra040974.1-P	Field mustard	nucleus, plastid	34.48	27.35
Os02t0672100-01	Rice	nucleus	35.99	27.15
Zm00001d002654_P003	Maize	nucleus	36.85	27.01
KXG36163	Sorghum	nucleus	33.84	26.98
Zm00001d031992_P001	Maize	nucleus	35.13	26.94
Zm00001d006319_P001	Maize	nucleus	31.9	26.48
TraesCS2D01G400300.2	Wheat	nucleus	36.85	25.83
TraesCS2A01G403200.2	Wheat	nucleus	36.64	25.64
Bra010981.1-P	Field mustard	nucleus	20.47	25.13
Bra024771.1-P	Field mustard	nucleus	19.83	24.02
Bra024841.1-P	Field mustard	nucleus	22.2	23.2
Bra017432.1-P	Field mustard	nucleus	21.98	23.18
Bra026624.1-P	Field mustard	nucleus	21.77	23.06
Bra004050.1-P	Field mustard	nucleus	20.47	23.0
Bra004283.1-P	Field mustard	nucleus	20.26	22.82
Bra038293.1-P	Field mustard	nucleus	31.9	16.7

Protein Annotations

EnsemblPlants:Bra026203.1	EnsemblPlants:Bra026203.1-P	EnsemblPlantsGene:Bra026203	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF66
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000253EF3D
UniProt:M4EBP4	MapMan:15.5.15	:	:	:	:

Description

AT1G14580 (E=4e-124) | zinc finger (C2H2 type) family protein

Coordinates

chrA06:+:5594022..5596432

Molecular Weight (calculated)

50822.2 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.719

Length

464 amino acids

Sequence
(BLAST)

001: MSSSYNNTIS SSSTQSFPLL AIGANNFNRE ETAMTMNQQR PNSVSPPPRR LRNKPGNPSP DAEVIALTPE EIMATNRFQC EVCEKGFQRQ QNLQLHRRGH
101: NLPFNLKQKS DEEIRRKVYV CPEPTCVYHD PSRALGDLTG IKKHYCRKHG EKKFKCEKCD KFYAVESDCK AHSKICGTKE YRCVCGTKFS RSDSYETHRA
201: FCEALAQESA GNPNLSFTEM LAAAGGSDGS SRDGLHGGAS SALSHNHFGD NSNSGFAPPG AGFNLNRSSS PKFEDFFPQS TNPNHGPTTN FPMQYPSNQG
301: LLARNDQNLM NQHGLINNNN VPSAQLRGSS VAANNFGGSG NVNFQGQMNS LAATSGQQGR PGPAQYERES PPSSTVIFST RSSLVAFCNR EAQYGVNLTA
401: PDSQFICSSV NMLRWLAALA LQLIEGPDRR TLDFLGVNGR GGRNEPPLDL DMKFSDPNNP FGNV

Best Arabidopsis Sequence Match ( AT1G14580.1 )
(BLAST)

001: MSSSYNTIAL SSTPTFLLSS AAAGPGPNNF NRQEAAMTMV QQQPTSSVAP PPKKRRNQPG NPNPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH
101: RRGHNLPWKL KQKSNKEVRR KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTKEYRCDCG TIFSRRDSYI
201: THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ
301: GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ
401: QGRSPSLFDL HFANNLSMGG SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA

Arabidopsis Description

C2H2-like zinc finger protein [Source:TAIR;Acc:AT1G14580]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.