Factsheet for Bra026624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09400	Canola	nucleus	98.86	98.86
CDY15800	Canola	nucleus	94.75	93.89
AT2G01940.3	Thale cress	nucleus	88.36	86.77
Bra024841.1-P	Field mustard	nucleus	87.67	86.49
Bra017432.1-P	Field mustard	nucleus	86.3	85.91
VIT_01s0011g06400.t01	Wine grape	nucleus	61.42	63.29
KRH58582	Soybean	nucleus	60.5	60.23
KRH42485	Soybean	nucleus	60.05	58.19
Bra024771.1-P	Field mustard	nucleus	50.46	57.7
Bra010981.1-P	Field mustard	nucleus	49.09	56.88
GSMUA_Achr7P18610_001	Banana	nucleus	48.86	56.61
Bra004050.1-P	Field mustard	nucleus	52.05	55.21
Bra004283.1-P	Field mustard	nucleus	51.37	54.61
GSMUA_Achr5P23130_001	Banana	nucleus	47.03	54.21
GSMUA_Achr6P02490_001	Banana	nucleus	45.66	54.05
Bra036013.1-P	Field mustard	nucleus	18.95	52.53
GSMUA_Achr10P...	Banana	nucleus	45.43	51.96
GSMUA_Achr3P20220_001	Banana	nucleus	49.54	51.18
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	43.38	49.61
Solyc05g054030.2.1	Tomato	nucleus	42.69	49.08
GSMUA_Achr10P...	Banana	nucleus	44.52	48.87
Zm00001d005871_P002	Maize	nucleus	46.12	45.8
TraesCS4B01G230800.1	Wheat	nucleus, plastid	42.24	45.68
TraesCS4D01G232000.1	Wheat	nucleus, plastid	42.69	45.17
TraesCS4A01G074700.1	Wheat	nucleus, plastid	42.69	45.06
Os03t0237250-01	Rice	plastid	43.84	43.84
HORVU4Hr1G064740.2	Barley	nucleus, plastid	42.47	43.76
TraesCS5B01G232200.1	Wheat	nucleus	49.09	43.7
TraesCS5A01G233700.1	Wheat	nucleus	48.63	43.38
TraesCS5D01G240600.1	Wheat	nucleus	48.4	43.18
Zm00001d047976_P001	Maize	nucleus, plastid	43.15	42.19
Zm00001d028361_P001	Maize	nucleus, plastid	43.38	42.04
Zm00001d020683_P001	Maize	nucleus	47.49	41.85
Zm00001d031759_P001	Maize	nucleus	49.32	41.7
EER96827	Sorghum	nucleus	47.49	41.68
KXG39813	Sorghum	nucleus, plastid	43.15	41.18
Os08t0467100-01	Rice	nucleus	49.09	40.34
EES13982	Sorghum	nucleus	49.09	40.11
Bra036098.1-P	Field mustard	nucleus, plastid	28.31	28.44
Bra018535.1-P	Field mustard	plastid	25.57	27.72
Bra033840.1-P	Field mustard	nucleus	28.54	27.59
Bra030886.1-P	Field mustard	nucleus	26.94	27.0
Bra033724.1-P	Field mustard	nucleus	26.71	25.22
Bra015271.1-P	Field mustard	nucleus	26.94	24.48
Bra037151.1-P	Field mustard	nucleus	26.71	23.78
Bra032541.1-P	Field mustard	nucleus	26.03	23.27
Bra026204.1-P	Field mustard	nucleus, plastid	23.74	23.11
Bra021510.1-P	Field mustard	nucleus	26.71	22.94
Bra026819.1-P	Field mustard	nucleus	24.43	22.91
Bra027394.1-P	Field mustard	nucleus	26.26	22.77
Bra001523.1-P	Field mustard	nucleus	26.48	22.66
Bra005741.1-P	Field mustard	nucleus	26.03	22.62
Bra009549.1-P	Field mustard	nucleus	26.26	22.29
Bra026203.1-P	Field mustard	nucleus, plastid	23.06	21.77
Bra024833.1-P	Field mustard	plastid	25.34	21.64
Bra026616.1-P	Field mustard	nucleus	25.11	21.53
Bra024834.1-P	Field mustard	nucleus, plastid	26.94	21.38
Bra040974.1-P	Field mustard	nucleus, plastid	26.94	20.17
Bra026617.1-P	Field mustard	nucleus	27.17	20.17
Bra023223.1-P	Field mustard	plastid	21.92	20.0
Bra038293.1-P	Field mustard	nucleus	26.71	13.21

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra026624	EnsemblPlants:Bra026624.1	EnsemblPlants:Bra026624.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009630	InterPro:IPR013087	UniProt:M4ECW4	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR34946	PANTHER:PTHR34946:SF6	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002546A8F	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

AT2G01940 (E=2e-183) SGR5, ATIDD15 | nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA02:-:20827959..20830768

Molecular Weight (calculated)

49161.0 Da

IEP (calculated)

8.910

GRAVY (calculated)

-0.821

Length

438 amino acids

Sequence
(BLAST)

001: MMRTDQDTVV MLDAAPNKNT SNTCCVVSSS SSDPFLSSSE NGVATTNTSN QKRKRRPAGT PDPDAEVVSL SPRTLLESDR YICEICNQGF QRDQNLQMHR
101: RRHKVPWKLL KRDNNIEVKK RVYVCPEPSC LHHDPCHALG DLVGIKKHFR RKHSNHKQWV CERCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF
201: IEHQDSCSIR KVHHEPPPPP QATVNVPACS SRTASTASTP STETNYGGAV ATPLPLEGRP IPIRNSSNDV NLELQLLPLT PNQNRNQENQ QHKVKEPSHH
301: RNHHDTTNLN LSIAPSAPSL SHQYNNFDRI KEIMASEQIM KLAMKEKAYA EEAKREAKRQ REIAENEFVN AKKIRQQAQA ELERAKLLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVASADE TSLVVSYMSS ANTDGEAS

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.