CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047976_P001	Maize	nucleus, plastid	81.48	83.48
Zm00001d028361_P001	Maize	nucleus, plastid	81.7	82.96
TraesCS4D01G232000.1	Wheat	nucleus, plastid	69.93	77.54
TraesCS4A01G074700.1	Wheat	nucleus, plastid	69.28	76.63
TraesCS4B01G230800.1	Wheat	nucleus, plastid	67.32	76.3
HORVU4Hr1G064740.2	Barley	nucleus, plastid	70.37	76.0
Os03t0237250-01	Rice	plastid	71.02	74.43
CDX96046	Canola	nucleus	29.63	58.37
Solyc01g005060.2.1	Tomato	nucleus	39.65	53.69
KRH60588	Soybean	nucleus	43.14	49.5
KRH41885	Soybean	nucleus	40.74	49.21
Solyc06g072360.2.1	Tomato	nucleus	41.39	48.47
VIT_01s0011g06400.t01	Wine grape	nucleus	43.57	47.06
CDY04204	Canola	nucleus	36.17	46.24
PGSC0003DMT400079735	Potato	nucleus, plastid	44.01	46.22
Bra010981.1-P	Field mustard	nucleus	37.91	46.03
CDY36123	Canola	nucleus	37.91	46.03
CDX84974	Canola	nucleus	38.34	45.95
CDY51986	Canola	nucleus	37.69	45.77
CDY60366	Canola	nucleus	38.13	45.69
PGSC0003DMT400069306	Potato	nucleus	40.74	45.5
Bra024771.1-P	Field mustard	nucleus	37.91	45.43
KRH58582	Soybean	nucleus	42.92	44.77
AT1G25250.3	Thale cress	nucleus	37.47	44.68
AT1G68130.1	Thale cress	nucleus	40.52	44.39
Bra004283.1-P	Field mustard	nucleus	39.22	43.69
CDY04203	Canola	plastid	36.6	43.64
VIT_17s0000g01870.t01	Wine grape	nucleus	43.14	43.52
Bra026624.1-P	Field mustard	nucleus	41.18	43.15
CDY07400	Canola	nucleus	38.78	43.1
Bra004050.1-P	Field mustard	nucleus	38.78	43.1
CDY09400	Canola	nucleus	40.74	42.69
KRH38986	Soybean	nucleus	44.01	42.62
Solyc03g098070.2.1	Tomato	nucleus	33.55	42.31
EER96827	Sorghum	nucleus	45.97	42.28
KRH42485	Soybean	nucleus	41.61	42.26
CDY15800	Canola	nucleus	40.3	41.86
Bra017432.1-P	Field mustard	nucleus	40.09	41.82
AT2G01940.3	Thale cress	nucleus	40.3	41.48
Solyc05g054030.2.1	Tomato	nucleus	34.42	41.47
CDY17620	Canola	nucleus	40.09	41.44
Bra024841.1-P	Field mustard	nucleus	40.09	41.44
KRH48724	Soybean	nucleus	43.57	41.41
CDY63960	Canola	nucleus	40.52	41.24
CDY04102	Canola	nucleus	40.3	41.2
CDY60095	Canola	nucleus	39.0	40.5
EES13982	Sorghum	nucleus	46.41	39.74
KXG38489	Sorghum	nucleus	25.71	27.57
EES02307	Sorghum	nucleus	28.1	25.9
EES02157	Sorghum	nucleus	26.58	25.36
EES00944	Sorghum	nucleus	26.36	25.16
EES04172	Sorghum	nucleus	27.45	24.23
EER95332	Sorghum	nucleus	26.8	23.43
OQU89911	Sorghum	nucleus, plastid	26.36	22.7
KXG30322	Sorghum	nucleus	23.09	22.32
EES05153	Sorghum	nucleus	23.53	22.0
KXG25416	Sorghum	nucleus	25.71	21.34
EES11271	Sorghum	nucleus	26.8	20.53
KXG31026	Sorghum	nucleus	26.36	20.34
KXG36163	Sorghum	nucleus	24.84	19.59
EER97442	Sorghum	nucleus	27.23	15.94

Protein Annotations

EnsemblPlants:KXG39813	EnsemblPlantsGene:SORBI_3001G443000	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593	PANTHER:PTHR10593:SF30
PFscan:PS50157	ProteinID:KXG39813	ProteinID:KXG39813.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI00081AD7C4	UniProt:A0A1B6QPH6	MapMan:15.5.15	:	:

Description

hypothetical protein

Coordinates

chr1:+:72052068..72057883

Molecular Weight (calculated)

47918.6 Da

IEP (calculated)

9.499

GRAVY (calculated)

-0.490

Length

459 amino acids

Sequence
(BLAST)

001: MALLVKSHHQ MLVSSSTSSS SPSASQQQRQ PPPAHPPPPP PSSSCLTDQQ PSPAKRKRRP PGTPDPDAEV VALSPRTLLE SDRYVCEICG QGFQREQNLQ
101: MHRRRHKVPW RLVKRAPPPA AAGGEDGAAG GGGGANSSST AGGGGAPRKR VFVCPEPSCL HHDPAHALGD LVGIKKHFRR KHGGRRQWVC ARCAKGYAVQ
201: SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDACNSSR MRGEAAAVVA VPPSALPVIR PAVPRHPATV APPPPELQLL PASSAAASSS APPLTSTSLS
301: TTTTASQKQE ERPHAAATTT KLQLSIGPIV TATGADAAAV VGEDEEDSEA EELRRAMEEK AAADAARERA RGEAAAAERA LDEARRARQR ARADLEKAFA
401: LRDHAALLLA QVTCHACRQR SLAVAAVVRG GGGGGEGHAG PAMACDSIRG GGGFGAAGI

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.