CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044261_P001	Maize	nucleus	85.45	85.62
Zm00001d011223_P002	Maize	nucleus	83.16	85.47
HORVU3Hr1G049810.3	Barley	nucleus	56.76	59.22
TraesCS3D01G209800.1	Wheat	nucleus	57.8	58.65
TraesCS3A01G205800.1	Wheat	nucleus	56.96	57.44
TraesCS3B01G237700.1	Wheat	nucleus	56.34	57.42
Os01t0572300-01	Rice	nucleus	58.0	51.96
EES02307	Sorghum	nucleus	41.37	39.96
EES02157	Sorghum	nucleus	38.05	38.05
EER95332	Sorghum	nucleus	40.54	37.14
KXG38489	Sorghum	nucleus	32.64	36.68
KXG30322	Sorghum	nucleus	33.47	33.89
EES04172	Sorghum	nucleus	36.59	33.85
EES05153	Sorghum	nucleus	33.68	32.99
EES11271	Sorghum	nucleus	40.75	32.72
KXG25416	Sorghum	nucleus	37.01	32.19
OQU89911	Sorghum	nucleus, plastid	35.34	31.89
KXG31026	Sorghum	nucleus	38.88	31.43
KXG36163	Sorghum	nucleus	33.26	27.49
KXG39813	Sorghum	nucleus, plastid	25.16	26.36
EER96827	Sorghum	nucleus	25.57	24.65
EES13982	Sorghum	nucleus	24.95	22.39
EER97442	Sorghum	nucleus	34.3	21.05

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8078623	UniProt:C5XNS2	EnsemblPlants:EES00944	ProteinID:EES00944
ProteinID:EES00944.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	PFAM:PF00096
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF101	SMART:SM00355	EnsemblPlantsGene:SORBI_3003G194600
SUPFAM:SSF57667	UniParc:UPI0001A84889	RefSeq:XP_002455824.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:51813621..51820850

Molecular Weight (calculated)

51623.9 Da

IEP (calculated)

8.511

GRAVY (calculated)

-0.585

Length

481 amino acids

Sequence
(BLAST)

001: MFHHQQEFLQ AEAAAAADRE SSMSNLTSSA NAAPAAAAVP PPPAAGNNKR KRSLPGNPDP EAEVVALSPA TLMATNRFVC EICGKGFQRD QNLQLHRRGH
101: NLPWKLKQRG TGKEAQRKKV YVCPEASCVH HDPARALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVHSD WKAHSKICGT REYKCDCGTI FSRRDSFITH
201: RAFCDALTEE SAKAIGLNAM AAAPAPAHLH HHPLLFSPPP AAHVMQQQQQ VDVALLQDHH HHHQHQEVMQ PPPQQHCNYA MKTEMPPWPP AMAYDHSLML
301: PAAQSSATSA PPPPQPQLPA ASAHLSATAL LQKAAQMGAT IGGAGTGYTQ MAGAATSAPG TASSFGLGLP GLQNAHHHQQ QDGAGVMSAG LARTASSHGR
401: SGEEGGADGM TRDFLGLRAF SHRDILGLAG LDSSCMGAIT ANASMSCYEP QQQHAQPQAH QAQQQQQQSS NEPWHGMGSH S

Best Arabidopsis Sequence Match ( AT1G55110.2 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.