Factsheet for TraesCS3D01G209800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G237700.1	Wheat	nucleus	95.99	96.4
HORVU3Hr1G049810.3	Barley	nucleus	93.46	96.1
TraesCS3A01G205800.1	Wheat	nucleus	96.62	96.02
EES00944	Sorghum	nucleus	58.65	57.8
Zm00001d011223_P002	Maize	nucleus	56.75	57.48
Zm00001d044261_P001	Maize	nucleus	56.33	55.62
Os01t0572300-01	Rice	nucleus	52.53	46.37
TraesCS3D01G107300.1	Wheat	nucleus	41.98	40.78
TraesCS3D01G171300.1	Wheat	nucleus	39.45	38.09
TraesCS6D01G116300.1	Wheat	nucleus	31.43	36.52
TraesCS4D01G262500.1	Wheat	nucleus	39.24	35.36
TraesCS4D01G294900.1	Wheat	nucleus	33.97	33.26
TraesCS2D01G287500.1	Wheat	nucleus	32.28	33.19
TraesCS3D01G449900.1	Wheat	nucleus	34.6	32.22
TraesCS5D01G364900.1	Wheat	nucleus, plastid	35.23	30.53
TraesCS6D01G235800.1	Wheat	nucleus	37.13	30.45
TraesCS2D01G400300.2	Wheat	nucleus	40.51	29.0
TraesCS4D01G232000.1	Wheat	nucleus, plastid	24.89	28.5
TraesCS5D01G240600.1	Wheat	nucleus	24.68	23.83
TraesCS2D01G199300.3	Wheat	nucleus	34.18	19.17

Protein Annotations

EnsemblPlants:TraesCS3D01G209800.1	EnsemblPlantsGene:TraesCS3D01G209800	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF101	PFAM:PF00096
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15

Description

No Description!

Coordinates

chr3D:+:277221768..277224102

Molecular Weight (calculated)

51372.3 Da

IEP (calculated)

8.312

GRAVY (calculated)

-0.681

Length

474 amino acids

Sequence
(BLAST)

001: MYHHHLQQQQ QQRGESEAAA SVDQDSSMSN LTTSASASAN PPPPPTPASN KRKRSLPGNP DPESEVVALS PATLMATNRF LCEICGKGFQ RDQNLQLHRR
101: GHNLPWKLKQ RGSKEVVRKK VYICPEASCV HHDPSRALGD LTGIKKHFFR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT VFSRRDSFIT
201: HRAFCDALTE ESNKAISGGG LPLPPIAHAQ HHAMLYSPHD LMQQQQHQEL AAFQDHHHHH QVMQQHCNFD VKPEMQPWPT MPYDDVHHPL LQPLCSATAQ
301: SSATSVPTPT QQQQLPAAAA HLSATALLQK AAQMGATIGG AGAGGAGVHY TQMAGSATSA TGSATFGLGL SCLSNQQMMS LARTASQGRS GEEGGASGGA
401: NDGMTRDFLG LRAFSHRDIL GLAGFDSSCM GTAVNTGSNN TNMAPCYEPQ QQGQPQPQQQ QSSNEPWHGM GSHA

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.