Factsheet for TraesCS5D01G364900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G358600.1	Wheat	nucleus, plastid	96.16	96.34
TraesCS5A01G356100.1	Wheat	nucleus, plastid	95.61	95.96
CDY04118	Canola	nucleus	19.38	89.08
CDY09390	Canola	nucleus	19.01	87.39
Os09t0555700-02	Rice	nucleus	71.66	73.27
CDY53540	Canola	nucleus	23.4	65.98
CDY04117	Canola	nucleus	25.41	64.95
KRG89168	Soybean	nucleus, plastid	35.28	55.46
GSMUA_Achr3P13990_001	Banana	nucleus	38.21	49.06
GSMUA_Achr9P23870_001	Banana	nucleus	38.21	48.16
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	41.68	46.53
GSMUA_Achr1P17940_001	Banana	nucleus	39.49	46.25
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	40.59	45.4
VIT_01s0010g02100.t01	Wine grape	nucleus	46.8	44.76
KRH49489	Soybean	nucleus, plastid	43.14	44.28
KRH49485	Soybean	nucleus	43.33	43.65
KRG89167	Soybean	nucleus, plastid	43.14	42.99
KRG90705	Soybean	nucleus	44.42	42.86
KRH36039	Soybean	nucleus	44.06	42.21
KRH34792	Soybean	nucleus	42.78	42.16
KRG91985	Soybean	nucleus	42.96	41.96
GSMUA_Achr4P05240_001	Banana	nucleus	37.29	40.8
CDY59418	Canola	nucleus	30.71	40.68
TraesCS3D01G107300.1	Wheat	nucleus	36.2	40.57
TraesCS6D01G235800.1	Wheat	nucleus	42.78	40.48
CDY45271	Canola	nucleus	30.71	40.38
TraesCS6D01G116300.1	Wheat	nucleus	29.98	40.2
TraesCS3D01G171300.1	Wheat	nucleus	35.83	39.92
PGSC0003DMT400075837	Potato	nucleus	37.66	39.77
CDY17440	Canola	nucleus	34.55	39.54
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	47.53	39.33
Solyc04g008500.2.1	Tomato	nucleus	37.11	39.27
CDY03081	Canola	nucleus	37.11	38.74
Bra026204.1-P	Field mustard	nucleus, plastid	31.81	38.67
CDY45270	Canola	nucleus	31.81	38.67
CDY17615	Canola	nucleus	36.93	38.33
CDY15814	Canola	nucleus	32.91	38.05
AT2G02080.3	Thale cress	nucleus, plastid	35.83	37.98
TraesCS2D01G400300.2	Wheat	nucleus	45.89	37.92
AT1G14580.3	Thale cress	nucleus	33.09	37.63
CDY17614	Canola	nucleus, plastid	35.28	37.62
Bra026819.1-P	Field mustard	nucleus	31.99	37.47
CDX81653	Canola	nucleus	31.99	37.47
Bra024833.1-P	Field mustard	plastid	35.1	37.43
CDY09391	Canola	nucleus	38.21	36.86
CDY03080	Canola	nucleus, plastid	34.73	36.82
Bra026616.1-P	Field mustard	nucleus	34.37	36.79
Bra024834.1-P	Field mustard	nucleus, plastid	36.93	36.59
CDY15811	Canola	nucleus	37.84	36.44
Bra026203.1-P	Field mustard	nucleus, plastid	30.9	36.42
Bra023223.1-P	Field mustard	plastid	31.81	36.25
TraesCS3D01G449900.1	Wheat	nucleus	33.09	35.56
TraesCS4D01G262500.1	Wheat	nucleus	34.19	35.55
Bra026617.1-P	Field mustard	nucleus	38.21	35.42
TraesCS3D01G209800.1	Wheat	nucleus	30.53	35.23
Bra040974.1-P	Field mustard	nucleus, plastid	37.66	35.21
TraesCS2D01G287500.1	Wheat	nucleus	29.43	34.92
AT2G02070.2	Thale cress	nucleus	38.21	34.72
CDY12268	Canola	nucleus	27.79	34.08
CDY68983	Canola	nucleus	24.13	33.76
TraesCS4D01G294900.1	Wheat	nucleus	29.07	32.85
TraesCS4D01G232000.1	Wheat	nucleus, plastid	21.94	28.99
TraesCS5D01G240600.1	Wheat	nucleus	22.12	24.64
TraesCS2D01G199300.3	Wheat	nucleus	34.19	22.13

Protein Annotations

EnsemblPlants:TraesCS5D01G364900.1	EnsemblPlantsGene:TraesCS5D01G364900	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF66	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr5D:+:442331554..442338669

Molecular Weight (calculated)

55994.6 Da

IEP (calculated)

9.557

GRAVY (calculated)

-0.511

Length

547 amino acids

Sequence
(BLAST)

001: MAAASSAPFF GLSDAQMQPL MAAQQPPAPA AAAPAPKKKR NQPGNPNPDA EVIALSPRSL MATNRFVCEV CGKGFQREQN LQLHRRGHNL PWKLKQKNPK
101: ETRRRVYLCP EPTCVHHDPA RALGDLTGIK KHYCRKHGEK KWKCDKCAKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL
201: PPIGAGMYGG PGNMALGNLS GMTPQMAGGF PDQSGHHSSA SAIDVLNLGG GGGNAGQFEH LMPSSSGSSM FRSQAATSSP FYMGGGTAQD FGEDDVHRSH
301: GNQGSLLQQG KSPAAFHGLM QLPDQHQGGG GGNGNNSLLN LGFFSGNGNG SGQDSRLVFQ NQYNGSAGIG NNSNGNGENG GIVGSSSVLG GGGGGFPSLY
401: SSSETGGGLP QMSATALLQK AAQMGATTSS HNAGAGGAGL LRGPGMRGGS GEGGSSAAAA AASERQSFHD LIMNSLGSGS GASATTGGRA GAFGSGGGFP
501: VDDGKLSTRD FLGVGPGGVV QAGMGPPRRH SGGAGLHMGS LDPAELK

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.