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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G192600.1
TraesCS2A01G532900.1
TraesCS2B01G214600.1
TraesCS2B01G562400.1
TraesCS2D01G055700.1
TraesCS2D01G194800.1
TraesCS2D01G534700.1
TraesCS3A01G487500.1
TraesCS3B01G535100.1
TraesCS3D01G482600.1
TraesCS4A01G143200.1
TraesCS4A01G185900.1
TraesCS4A01G191300.1
TraesCS4B01G124000.1
TraesCS4B01G133000.1
TraesCS4B01G162200.1
TraesCS4D01G122000.1
TraesCS4D01G127800.2
TraesCS4D01G159600.1
TraesCS5A01G135000.1
TraesCS5A01G144000.1
TraesCS5B01G133800.1
TraesCS5B01G143100.1
TraesCS5D01G139500.1
TraesCS5D01G148000.1
TraesCS6D01G055100.1
TraesCS7A01G264800.1
TraesCS7B01G162700.4
TraesCS7D01G265600.3
TraesCSU01G014000.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G03840.1 TraesCS4A01G191300.1 AT3G54220.1 17785527
AT1G03840.1 TraesCS4B01G124000.1 AT3G54220.1 17785527
AT1G03840.1 TraesCS4D01G122000.1 AT3G54220.1 17785527
AT1G03840.1 TraesCS5A01G144000.1 AT3G54220.1 17785527
AT1G03840.1 TraesCS5B01G143100.1 AT3G54220.1 17785527
AT1G03840.1 TraesCS5D01G148000.1 AT3G54220.1 17785527
AT1G03840.1 TraesCS2A01G192600.1 AT4G37650.1 17785527
AT1G03840.1 TraesCS2B01G214600.1 AT4G37650.1 17785527
AT1G03840.1 TraesCS2D01G194800.1 AT4G37650.1 17785527
AT5G44160.1 TraesCS2A01G532900.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS2B01G562400.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS2D01G055700.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS2D01G534700.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS3A01G487500.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS3B01G535100.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS3D01G482600.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS4A01G185900.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS4B01G133000.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS4D01G127800.2 AT1G50420.1 21798944
AT5G44160.1 TraesCS5A01G135000.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS5B01G133800.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS5D01G139500.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS6D01G055100.1 AT1G50420.1 21798944
AT5G44160.1 TraesCSU01G014000.1 AT1G50420.1 21798944
AT5G44160.1 TraesCS4A01G143200.1 AT3G12280.1 22921914
AT5G44160.1 TraesCS4B01G162200.1 AT3G12280.1 22921914
AT5G44160.1 TraesCS4D01G159600.1 AT3G12280.1 22921914
AT5G44160.1 TraesCS7A01G264800.1 AT3G12280.1 22921914
AT5G44160.1 TraesCS7B01G162700.4 AT3G12280.1 22921914
AT5G44160.1 TraesCS7D01G265600.3 AT3G12280.1 22921914
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G188400.2 Wheat nucleus 95.62 97.35
TraesCS2B01G218900.1 Wheat nucleus 91.6 96.51
HORVU2Hr1G036710.3 Barley nucleus 86.63 84.33
Os07t0581366-00 Rice cytosol, nucleus 55.38 73.82
CDY14910 Canola nucleus 10.89 69.17
Bra036013.1-P Field mustard nucleus 12.19 65.19
Zm00001d006682_P001 Maize nucleus 54.91 62.53
CDY72283 Canola nucleus 13.96 62.43
EER97442 Sorghum nucleus 57.4 61.86
Zm00001d021932_P001 Maize nucleus 57.75 59.88
VIT_12s0028g03030.t01 Wine grape nucleus 21.54 42.62
TraesCS4D01G262500.1 Wheat nucleus 25.33 40.68
TraesCS6D01G116300.1 Wheat nucleus 18.58 38.48
Bra033724.1-P Field mustard nucleus 20.83 37.93
CDY22307 Canola nucleus 20.83 37.93
KRH49655 Soybean nucleus 16.09 37.57
AT5G44160.1 Thale cress nucleus 20.71 37.55
CDX94759 Canola nucleus 20.59 37.5
KRH22332 Soybean nucleus 20.95 37.34
KRH25657 Soybean nucleus 20.71 37.16
KRH26995 Soybean nucleus 21.07 37.08
KRH55868 Soybean nucleus 20.59 36.71
TraesCS3D01G107300.1 Wheat nucleus 20.83 36.07
TraesCS3D01G171300.1 Wheat nucleus 20.95 36.05
CDY18188 Canola nucleus 20.24 35.7
Bra015271.1-P Field mustard nucleus 20.24 35.48
CDX89862 Canola nucleus 20.12 35.42
Bra032541.1-P Field mustard nucleus 20.36 35.1
CDY32514 Canola nucleus 20.36 35.1
AT1G03840.1 Thale cress nucleus 20.83 34.78
PGSC0003DMT400024272 Potato nucleus 20.24 34.55
TraesCS5D01G364900.1 Wheat nucleus, plastid 22.13 34.19
TraesCS3D01G209800.1 Wheat nucleus 19.17 34.18
Solyc07g053570.2.1 Tomato nucleus 20.24 34.06
TraesCS3D01G449900.1 Wheat nucleus 20.36 33.79
TraesCS2D01G287500.1 Wheat nucleus 18.34 33.62
TraesCS4D01G294900.1 Wheat nucleus 19.17 33.47
TraesCS6D01G235800.1 Wheat nucleus 21.42 31.31
TraesCS4D01G232000.1 Wheat nucleus, plastid 14.56 29.71
TraesCS2D01G400300.2 Wheat nucleus 21.66 27.64
TraesCS5D01G240600.1 Wheat nucleus 14.56 25.05
Protein Annotations
EnsemblPlants:TraesCS2D01G199300.3EnsemblPlantsGene:TraesCS2D01G199300Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typencoils:CoilPANTHER:PTHR10593PANTHER:PTHR10593:SF29
PFAM:PF00096PFscan:PS50157ScanProsite:PS00028SEG:segSMART:SM00355SUPFAM:SSF57667
MapMan:15.5.15:::::
Description
No Description!
Coordinates
chr2D:-:149681095..149684069
Molecular Weight (calculated)
92010.1 Da
IEP (calculated)
5.794
GRAVY (calculated)
-0.754
Length
845 amino acids
Sequence
(BLAST)
001: MPPNPTEPEQ PEAAATPAPP KKKRNLPGTP DPDAEVIALS PGTLMATNRF VCEVCGKGFQ RDQNLQLHRR GHNLPWRLRQ RGPGAAPPRR RVYVCPEPGC
101: VHHSPARALG DLTGIKKHFC RKHGEKRWAC PRCGKRYAVQ ADLKAHAKTC GTREYRCDCG TLFTRRDSFV THRAFCGALV EETGRVLAVP APPSPRPPDL
201: EEVEENVDKD KEKEEENVDK HKEKEDEGGK GGEDENETSA VAEVDEPQHV EAAMEEPQPQ RIPSPPSPTP PSPTPQEQQP MVAVVRNLDE PVVVVEPIVD
301: IKQEEEDKRD EDVCFQEADK YNVAELEDSN LPDNDTPMPP CFLPSPSDAI GTDGSSTSCG TVSSASNSIA PATTTSTFAG LFASATTSTT PQSRSLRDLI
401: GVDPTFLCLA IGTPSSLFSQ TDASNPGTFA PPPAPHISAT ALLQKAAEAG ASQAGTSFLK EFGLASSSSS TPSRPPQGRF IDSSSTQSQQ PQGRFIECSS
501: TQSRLPQDRF IDSSSTQSRL PHDRFTDSIS TQSRLPQDRF IESSSTHSRL PQDRFIESSS TQSRLPQDRF IESSSTQSRL PQDRFIESSS TQSRLPQDRF
601: IDSSTQFRLP QDRYINNSMP SKLSQGRFMD TSLPSQQLLP QGRFLDNSPA SNLSQGRFFD NSQPSNPTQG RFFVNSPPSN LPHGRFTDYS SPGRLPQGMY
701: IDGLPQSRLP QGRYIDNSPQ AKLPQGGRFV DSNPQQWHQR SNNHNQLMDM EPGPMVSGSL GLGLAYEGSN PRLPDLMMGQ SPLFGPKPAT LDFLGLGIGG
801: TMGGSTASGG LPALMVGGEL DMGSAAQPPS PWEEAQRKTN GRTIL
Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.