Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G123600.1 | Wheat | nucleus | 97.34 | 95.57 |
| TraesCS3A01G105100.1 | Wheat | nucleus | 96.93 | 95.36 |
| Zm00001d039467_P001 | Maize | nucleus | 73.36 | 72.03 |
| Zm00001d008842_P001 | Maize | nucleus | 68.24 | 71.31 |
| EES02307 | Sorghum | nucleus | 71.93 | 70.48 |
| Os01t0195000-01 | Rice | nucleus | 69.47 | 69.61 |
| CDY70142 | Canola | nucleus | 21.72 | 58.24 |
| KRH47108 | Soybean | nucleus | 45.49 | 44.58 |
| KRH10015 | Soybean | nucleus | 42.01 | 43.16 |
| KRH23306 | Soybean | nucleus | 42.01 | 42.71 |
| Bra030886.1-P | Field mustard | nucleus | 37.7 | 42.11 |
| KRH44134 | Soybean | nucleus | 45.7 | 42.08 |
| TraesCS3D01G209800.1 | Wheat | nucleus | 40.78 | 41.98 |
| AT1G55110.2 | Thale cress | nucleus | 38.52 | 41.32 |
| TraesCS6D01G116300.1 | Wheat | nucleus | 33.81 | 40.44 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 44.06 | 40.41 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 39.55 | 39.31 |
| PGSC0003DMT400006385 | Potato | nucleus | 41.19 | 37.15 |
| Solyc03g121660.2.1 | Tomato | nucleus | 41.19 | 37.08 |
| TraesCS4D01G294900.1 | Wheat | nucleus | 36.48 | 36.78 |
| PGSC0003DMT400012504 | Potato | nucleus | 37.5 | 36.45 |
| Solyc06g062670.2.1 | Tomato | nucleus | 37.5 | 36.38 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 40.57 | 36.2 |
| TraesCS4D01G262500.1 | Wheat | nucleus | 38.52 | 35.74 |
| TraesCS2D01G287500.1 | Wheat | nucleus | 33.61 | 35.57 |
| TraesCS3D01G449900.1 | Wheat | nucleus | 35.45 | 33.99 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 39.34 | 33.22 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 41.8 | 30.82 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 25.0 | 29.47 |
| CDY70938 | Canola | cytosol, nucleus | 16.19 | 28.94 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 23.98 | 23.83 |
| TraesCS2D01G199300.3 | Wheat | nucleus | 36.07 | 20.83 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G107300.1 | EnsemblPlantsGene:TraesCS3D01G107300 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr3D:-:59855011..59856705
Molecular Weight (calculated)
51890.8 Da
IEP (calculated)
8.555
GRAVY (calculated)
-0.534
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLKDFAAIQ QQQQLALAAD ENMSNLTSAS GDQTSVSSHP LPPPSKKKRS LPGNPDPDAE VIALSPRALM ATNRYVCEIC GKGFQRDQNL QLHRRGHNLP
101: WKLKQRNPNE VVRKKVYVCP EPGCVHHDRS RALGDLTGIK KHFSRKHGEK KWKCDKCAKR YAVQSDWKAH SKVCGTREYR CDCGTLFSRR DSFITHRAFC
201: DALAEESARA VAVAVEEQQH PGMLYSHGGG GGAGFQMPAV MDPSSSLGGG HGLIQELCLK REREQQQQQQ QFAQPWLSEQ QQLEMGGEGA QAMFGTARME
301: QEFNASSTPE SSTQPVGMSF ASFPSSSAGA TASSHMSATA LLQKAAQMGA TLSRPSGQGQ MAASTFSSSV AITNVTNNAP AAATSSSAAT STAVGVGFGH
401: AFESPAQFGV DQRPSANRTA GNAGASGGGI GNAGGANDGL TRDFLGLRAF SHGDILSMAG FDPCMPTSAS ARAAYDQQGP QSSNPWHG
101: WKLKQRNPNE VVRKKVYVCP EPGCVHHDRS RALGDLTGIK KHFSRKHGEK KWKCDKCAKR YAVQSDWKAH SKVCGTREYR CDCGTLFSRR DSFITHRAFC
201: DALAEESARA VAVAVEEQQH PGMLYSHGGG GGAGFQMPAV MDPSSSLGGG HGLIQELCLK REREQQQQQQ QFAQPWLSEQ QQLEMGGEGA QAMFGTARME
301: QEFNASSTPE SSTQPVGMSF ASFPSSSAGA TASSHMSATA LLQKAAQMGA TLSRPSGQGQ MAASTFSSSV AITNVTNNAP AAATSSSAAT STAVGVGFGH
401: AFESPAQFGV DQRPSANRTA GNAGASGGGI GNAGGANDGL TRDFLGLRAF SHGDILSMAG FDPCMPTSAS ARAAYDQQGP QSSNPWHG
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Arabidopsis Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.