Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G497200.1 | Wheat | nucleus | 92.73 | 92.37 |
| Os01t0935000-01 | Rice | nucleus | 55.99 | 59.87 |
| Zm00001d042202_P001 | Maize | nucleus | 59.14 | 57.33 |
| EES04172 | Sorghum | nucleus | 57.17 | 55.96 |
| GSMUA_Achr11P... | Banana | nucleus | 41.45 | 50.97 |
| TraesCS6D01G116300.1 | Wheat | nucleus | 31.24 | 38.97 |
| TraesCS3D01G171300.1 | Wheat | nucleus | 35.56 | 36.86 |
| PGSC0003DMT400063501 | Potato | nucleus | 25.74 | 36.39 |
| Solyc01g099340.2.1 | Tomato | nucleus | 30.26 | 36.32 |
| TraesCS3D01G107300.1 | Wheat | nucleus | 33.99 | 35.45 |
| TraesCS4D01G262500.1 | Wheat | nucleus | 36.54 | 35.36 |
| TraesCS3D01G209800.1 | Wheat | nucleus | 32.22 | 34.6 |
| VIT_14s0060g02440.t01 | Wine grape | nucleus, plastid | 35.95 | 34.46 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 35.17 | 34.42 |
| KRH71547 | Soybean | nucleus | 28.88 | 33.79 |
| PGSC0003DMT400029550 | Potato | nucleus | 29.86 | 33.55 |
| KRG92880 | Soybean | nucleus | 34.77 | 33.46 |
| TraesCS4D01G294900.1 | Wheat | nucleus | 31.63 | 33.26 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 35.56 | 33.09 |
| KRG96409 | Soybean | nucleus | 34.77 | 33.08 |
| KRH68532 | Soybean | nucleus | 33.2 | 33.01 |
| KRH33908 | Soybean | nucleus, plastid | 34.58 | 32.96 |
| TraesCS2D01G287500.1 | Wheat | nucleus | 29.67 | 32.75 |
| KRG96824 | Soybean | nucleus | 32.61 | 32.74 |
| KRH68150 | Soybean | nucleus | 28.88 | 32.45 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 35.36 | 31.14 |
| VIT_07s0104g01620.t01 | Wine grape | nucleus | 35.95 | 30.6 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 23.97 | 29.47 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 35.56 | 27.34 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 24.56 | 25.46 |
| TraesCS2D01G199300.3 | Wheat | nucleus | 33.79 | 20.36 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G449900.1 | EnsemblPlantsGene:TraesCS3D01G449900 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF44 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr3D:-:557924151..557926941
Molecular Weight (calculated)
53762.3 Da
IEP (calculated)
7.422
GRAVY (calculated)
-0.435
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSCMPPMAC GGGGATGTGE CTGSFSSVSS TGEGLGEEFR LPFLAINPPE IGEDDGDLRL VIAGTSDPLS APPATTTKKK KRCLPGTPDP SAEVIALSPR
101: TLMATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLRQRG AEGGAAPRKR AYVCPEPACV HHDPRRALGD LTGIKKHFCR KHGEKKWKCD RCAKRYAVHS
201: DWKAHAKVCG TREYRCDCGT LFSRRDSFVT HRAFCDALAQ ENSKLAQPAM NMATVASALQ GQQHAHHHHN LMLPSTHADD LDMDADEASA FEPDIKSPHL
301: KMFSDYDADA AAADNPLGCM LSSLGAAPSA FSPSSGLSML GLHAGPSDAA AMGGCYSPGN GSLASMSATA LLQKAAQMGA TTSSGYGVSF TPGHPGLAST
401: MAGLDRFPCS AGPFGPMRTH GPYDGVVGFG VGGLMPGQLY NDGDNGATRN VGPVASGADN PLDDERRRRQ AAGGDDVHVV DYMGVEHQRT SYGSVSSASP
501: FADHTGPWA
101: TLMATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLRQRG AEGGAAPRKR AYVCPEPACV HHDPRRALGD LTGIKKHFCR KHGEKKWKCD RCAKRYAVHS
201: DWKAHAKVCG TREYRCDCGT LFSRRDSFVT HRAFCDALAQ ENSKLAQPAM NMATVASALQ GQQHAHHHHN LMLPSTHADD LDMDADEASA FEPDIKSPHL
301: KMFSDYDADA AAADNPLGCM LSSLGAAPSA FSPSSGLSML GLHAGPSDAA AMGGCYSPGN GSLASMSATA LLQKAAQMGA TTSSGYGVSF TPGHPGLAST
401: MAGLDRFPCS AGPFGPMRTH GPYDGVVGFG VGGLMPGQLY NDGDNGATRN VGPVASGADN PLDDERRRRQ AAGGDDVHVV DYMGVEHQRT SYGSVSSASP
501: FADHTGPWA
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.