Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g099340.2.1 | Tomato | nucleus | 92.5 | 78.54 |
| PGSC0003DMT400029550 | Potato | nucleus | 43.61 | 34.66 |
| PGSC0003DMT400004390 | Potato | nucleus | 41.11 | 32.46 |
| GSMUA_Achr8P10040_001 | Banana | nucleus | 39.72 | 31.99 |
| PGSC0003DMT400027159 | Potato | nucleus | 42.22 | 30.89 |
| PGSC0003DMT400021189 | Potato | nucleus | 39.44 | 30.34 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 44.44 | 30.3 |
| PGSC0003DMT400020945 | Potato | nucleus | 41.94 | 30.14 |
| GSMUA_Achr11P... | Banana | nucleus | 34.44 | 29.95 |
| PGSC0003DMT400013174 | Potato | nucleus | 41.94 | 29.84 |
| PGSC0003DMT400024272 | Potato | nucleus | 40.56 | 29.49 |
| PGSC0003DMT400075837 | Potato | nucleus | 41.94 | 29.15 |
| PGSC0003DMT400049788 | Potato | nucleus | 37.78 | 28.51 |
| PGSC0003DMT400012504 | Potato | nucleus | 39.44 | 28.29 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 41.11 | 28.19 |
| PGSC0003DMT400006385 | Potato | nucleus | 41.94 | 27.91 |
| Os01t0935000-01 | Rice | nucleus | 36.11 | 27.31 |
| TraesCS3B01G497200.1 | Wheat | nucleus | 36.67 | 25.83 |
| EES04172 | Sorghum | nucleus | 37.22 | 25.77 |
| TraesCS3D01G449900.1 | Wheat | nucleus | 36.39 | 25.74 |
| Zm00001d042202_P001 | Maize | nucleus | 37.22 | 25.52 |
| PGSC0003DMT400069306 | Potato | nucleus | 25.83 | 22.63 |
| PGSC0003DMT400079735 | Potato | nucleus, plastid | 26.11 | 21.51 |
| PGSC0003DMT400040064 | Potato | nucleus | 40.28 | 19.7 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR013087 | UniProt:M1CAR6 | PFAM:PF12171 | EnsemblPlantsGene:PGSC0003DMG400024700 | PGSC:PGSC0003DMG400024700 | EnsemblPlants:PGSC0003DMT400063501 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF59 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0002960877 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
ATIDD4-DOMAIN 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400024700]
Coordinates
chr1:+:77154384..77156174
Molecular Weight (calculated)
40366.4 Da
IEP (calculated)
8.573
GRAVY (calculated)
-0.785
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTSN EIKKRVYICP ESSCIHHNPA RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH
101: SKTCGTKEYK CDCGTIFSRR DSFVTHRAFC DALAEENNKV NQVLATGTAG STQLAPELIS TTHMLNLPQI RNSNMKIPSI PLNMAGSMFS SSSGFNQLGT
201: NSSNMSSATA LLQQAAQMGA TVSNNMNSTL FNGVQIPIQS DHDHDQNQTQ FGSILQGFGG SMLQNSGDDH HKSSRVLQNE HGWYNSHNNS NTGLFNEKQG
301: ILNKEAGHSN EESLTLDFLG IGGMRQRNLH EMHQQQQEMS FEQQEVSHQS IQGVNSIWDD
101: SKTCGTKEYK CDCGTIFSRR DSFVTHRAFC DALAEENNKV NQVLATGTAG STQLAPELIS TTHMLNLPQI RNSNMKIPSI PLNMAGSMFS SSSGFNQLGT
201: NSSNMSSATA LLQQAAQMGA TVSNNMNSTL FNGVQIPIQS DHDHDQNQTQ FGSILQGFGG SMLQNSGDDH HKSSRVLQNE HGWYNSHNNS NTGLFNEKQG
301: ILNKEAGHSN EESLTLDFLG IGGMRQRNLH EMHQQQQEMS FEQQEVSHQS IQGVNSIWDD
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP EAEVIALSPK TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT
101: SKEVRKRVYV CPEKSCVHHH PTRALGDLTG IKKHFCRKHG EKKWKCEKCA KRYAVQSDWK AHSKTCGTRE YRCDCGTIFS RRDSFITHRA FCDALAEETA
201: RLNAASHLKS FAATAGSNLN YHYLMGTLIP SPSLPQPPSF PFGPPQPQHH HHHQFPITTN NFDHQDVMKP ASTLSLWSGG NINHHQQVTI EDRMAPQPHS
301: PQEDYNWVFG NANNHGELIT TSDSLITHDN NINIVQSKEN ANGATSLSVP SLFSSVDQIT QDANAASVAV ANMSATALLQ KAAQMGATSS TSPTTTITTD
401: QSAYLQSFAS KSNQIVEDGG SDRFFASFGS NSVELMSNNN NGLHEIGNPR NGVTVVSGMG ELQNYPWKRR RVDIGNAGGG GQTRDFLGVG VQTICHSSSI
501: NGWI
101: SKEVRKRVYV CPEKSCVHHH PTRALGDLTG IKKHFCRKHG EKKWKCEKCA KRYAVQSDWK AHSKTCGTRE YRCDCGTIFS RRDSFITHRA FCDALAEETA
201: RLNAASHLKS FAATAGSNLN YHYLMGTLIP SPSLPQPPSF PFGPPQPQHH HHHQFPITTN NFDHQDVMKP ASTLSLWSGG NINHHQQVTI EDRMAPQPHS
301: PQEDYNWVFG NANNHGELIT TSDSLITHDN NINIVQSKEN ANGATSLSVP SLFSSVDQIT QDANAASVAV ANMSATALLQ KAAQMGATSS TSPTTTITTD
401: QSAYLQSFAS KSNQIVEDGG SDRFFASFGS NSVELMSNNN NGLHEIGNPR NGVTVVSGMG ELQNYPWKRR RVDIGNAGGG GQTRDFLGVG VQTICHSSSI
501: NGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.