Factsheet for GSMUA_Achr8P10040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P14780_001	Banana	nucleus	40.27	50.42
GSMUA_Achr2P16690_001	Banana	nucleus	40.27	48.91
GSMUA_Achr2P08460_001	Banana	nucleus	34.45	48.89
GSMUA_Achr3P25410_001	Banana	nucleus	34.9	47.85
GSMUA_Achr5P22140_001	Banana	nucleus	40.49	47.51
GSMUA_Achr7P13540_001	Banana	nucleus	38.03	46.58
GSMUA_Achr7P09150_001	Banana	nucleus	42.06	45.85
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	36.69	45.05
GSMUA_Achr11P...	Banana	nucleus	41.39	44.69
GSMUA_Achr2P08910_001	Banana	nucleus	37.36	43.38
GSMUA_Achr9P06650_001	Banana	nucleus	35.57	43.32
GSMUA_Achr10P...	Banana	nucleus	36.02	42.71
GSMUA_Achr6P27030_001	Banana	nucleus	33.78	42.66
GSMUA_Achr10P...	Banana	nucleus	42.51	42.32
GSMUA_Achr3P13990_001	Banana	nucleus	40.27	42.25
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	49.66	41.81
GSMUA_Achr7P22720_001	Banana	mitochondrion	26.17	41.64
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	36.24	40.7
PGSC0003DMT400063501	Potato	nucleus	31.99	39.72
GSMUA_Achr1P17940_001	Banana	nucleus	41.39	39.61
Solyc01g099340.2.1	Tomato	nucleus	37.36	39.39
KRG92880	Soybean	nucleus	46.31	39.13
KRH33908	Soybean	nucleus, plastid	46.31	38.76
KRH68532	Soybean	nucleus	44.07	38.48
KRG96824	Soybean	nucleus	43.4	38.26
GSMUA_Achr9P23870_001	Banana	nucleus	36.69	37.79
GSMUA_Achr1P07110_001	Banana	nucleus	40.94	37.65
GSMUA_Achr7P24170_001	Banana	nucleus	42.28	37.65
GSMUA_Achr5P06450_001	Banana	nucleus	40.04	37.6
KRG96409	Soybean	nucleus	44.3	37.01
Solyc09g074780.2.1	Tomato	nucleus, plastid	42.73	36.73
GSMUA_Achr10P...	Banana	nucleus	39.15	36.53
GSMUA_Achr4P04310_001	Banana	nucleus	38.26	36.15
GSMUA_Achr4P14030_001	Banana	nucleus	43.4	35.73
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	38.93	35.51
PGSC0003DMT400029550	Potato	nucleus	35.57	35.1
KRH68150	Soybean	nucleus	35.57	35.1
GSMUA_Achr11P...	Banana	nucleus	40.04	35.03
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	38.26	34.97
GSMUA_Achr4P07200_001	Banana	nucleus	42.06	34.81
GSMUA_Achr3P29940_001	Banana	nucleus	45.19	34.77
KRH71547	Soybean	nucleus	33.78	34.71
GSMUA_Achr7P25960_001	Banana	nucleus	45.41	34.29
GSMUA_Achr11P...	Banana	nucleus	40.27	33.77
GSMUA_Achr4P05240_001	Banana	nucleus	37.36	33.4
GSMUA_Achr1P02080_001	Banana	nucleus	40.72	33.27
VIT_07s0104g01620.t01	Wine grape	nucleus	43.85	32.78
GSMUA_Achr11P...	Banana	nucleus	40.94	32.33
GSMUA_Achr6P02490_001	Banana	nucleus	26.4	31.89
GSMUA_Achr7P18610_001	Banana	nucleus	26.62	31.48
GSMUA_Achr10P...	Banana	nucleus	26.17	30.55
GSMUA_Achr5P23130_001	Banana	nucleus	25.5	30.0
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	24.38	28.46
GSMUA_Achr3P20220_001	Banana	nucleus	26.85	28.3
GSMUA_Achr10P...	Banana	nucleus	24.38	27.32
GSMUA_AchrUn_...	Banana	nucleus	42.28	21.26

Protein Annotations

EnsemblPlants:GSMUA_Achr8P10040_001	EnsemblPlants:GSMUA_Achr8T10040_001	EnsemblPlantsGene:GSMUA_Achr8G10040_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF34
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00029579FA
UniProt:M0TP57	MapMan:15.5.15	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_60.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G10040_001]

Coordinates

chr8:+:7147109..7149315

Molecular Weight (calculated)

48724.0 Da

IEP (calculated)

9.316

GRAVY (calculated)

-0.592

Length

447 amino acids

Sequence
(BLAST)

001: MSNITGGGGS FSSGSNAGED EVHKQSLLSC DSPAAAENSD ISAAQLPQLP PAKKKRNLPG TPADPKAEVI ALSPKTLMAT NRFVCEICRK GFQRDQNLQL
101: HRRGHNLPWK LRPRNGGSEA RKKVYVCPEP TCVHHNPSRA LGDLTGIKKH YCRKHGEKKW KCDKCSKKYA VQSDWKAHSK ICGTRQYKCD CGTIFSRRDS
201: FMTHRAFCDA LAQENNELSQ PLMATMASSL QGQAPPRLVM PIQHTSNTSS STTVPEFSYD MKNPPAIDAL AASLASRDMA GGMFPSFLGI PSSSGPVSFD
301: GLFEAQMPRP TAVSAHSSAT SQLQNAAQIG ATRRGMASVM AGRPYQLTSI HGGGLANLFY ASSVRETGDG SLKEMMARCG SGDVMTVDFL GVGGQRRPHM
401: QQQQQRERHN MEFGGVVLRT GMETPHHLQQ QMAYGRSDEP ENPVWDM

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.