Factsheet for GSMUA_Achr7P24170_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P08460_001	Banana	nucleus	33.07	52.7
GSMUA_Achr2P16690_001	Banana	nucleus	36.06	49.18
GSMUA_Achr3P25410_001	Banana	nucleus	31.87	49.08
GSMUA_Achr7P13540_001	Banana	nucleus	35.66	49.04
GSMUA_Achr7P14780_001	Banana	nucleus	34.26	48.18
GSMUA_Achr5P22140_001	Banana	nucleus	35.66	46.98
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	32.07	44.23
GSMUA_Achr9P06650_001	Banana	nucleus	32.27	44.14
GSMUA_Achr10P...	Banana	nucleus	39.24	43.88
GSMUA_Achr7P09150_001	Banana	nucleus	35.66	43.66
GSMUA_Achr3P13990_001	Banana	nucleus	36.26	42.72
GSMUA_Achr10P...	Banana	nucleus	32.07	42.71
GSMUA_Achr6P27030_001	Banana	nucleus	30.08	42.66
GSMUA_Achr2P08910_001	Banana	nucleus	32.47	42.34
GSMUA_Achr8P10040_001	Banana	nucleus	37.65	42.28
GSMUA_Achr7P22720_001	Banana	mitochondrion	23.11	41.28
GSMUA_Achr1P17940_001	Banana	nucleus	37.65	40.47
GSMUA_Achr5P06450_001	Banana	nucleus	37.05	39.08
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	30.88	38.94
GSMUA_Achr11P...	Banana	nucleus	31.27	37.92
GSMUA_Achr9P23870_001	Banana	nucleus	32.07	37.1
GSMUA_Achr10P...	Banana	nucleus	34.46	36.12
GSMUA_Achr1P07110_001	Banana	nucleus	34.86	36.01
GSMUA_Achr4P04310_001	Banana	nucleus	33.27	35.31
GSMUA_Achr4P14030_001	Banana	nucleus	37.85	34.99
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	33.47	34.29
GSMUA_Achr4P05240_001	Banana	nucleus	33.86	34.0
GSMUA_Achr4P07200_001	Banana	nucleus	35.86	33.33
GSMUA_Achr3P29940_001	Banana	nucleus	38.45	33.22
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	32.07	32.92
GSMUA_Achr11P...	Banana	nucleus	33.47	32.88
GSMUA_Achr11P...	Banana	nucleus	34.26	32.27
GSMUA_Achr7P18610_001	Banana	nucleus	24.1	32.01
GSMUA_Achr7P25960_001	Banana	nucleus	37.65	31.93
GSMUA_Achr5P23130_001	Banana	nucleus	23.51	31.05
GSMUA_Achr6P02490_001	Banana	nucleus	22.71	30.81
GSMUA_Achr1P02080_001	Banana	nucleus	33.47	30.71
GSMUA_Achr10P...	Banana	nucleus	23.11	30.29
GSMUA_Achr11P...	Banana	nucleus	33.07	29.33
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	22.11	28.98
GSMUA_Achr3P20220_001	Banana	nucleus	23.51	27.83
GSMUA_Achr10P...	Banana	nucleus	21.51	27.07
GSMUA_AchrUn_...	Banana	nucleus	37.65	21.26

Protein Annotations

MapMan:15.5.15	Gene3D:2.130.10.10	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr7G24170_001	EnsemblPlants:GSMUA_Achr7P24170_001	EnsemblPlants:GSMUA_Achr7T24170_001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR013087
InterPro:IPR015943	UniProt:M0TKA3	PFAM:PF12265	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF49	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000295DF2E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G24170_001]

Coordinates

chr7:-:26186255..26193275

Molecular Weight (calculated)

55462.7 Da

IEP (calculated)

9.904

GRAVY (calculated)

-0.647

Length

502 amino acids

Sequence
(BLAST)

001: MKVVEHKTPG LTSGTGEVTA VSSSQQSSFA SPNPLPAKKK RGPAGNPAPE AEVVALSPRS LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWRLKQRTS
101: KEARKKVYVC PEVSCVHHDP SRALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDCKA HSKICGTREY KCDCGTLFSS RRDSFITHRA FCDALAEENA
201: RVTTANLVGD AHQLLLPQPA SSAHEHSPVF PYKNHQSPYL SSHPTLTSSP HLSATALLQK AAQAGATMSR TKINTEMAAD TPTTAGIGLC LSSHRGMRYG
301: CGSSSHGLGP AVTFLQATAP GGSSEGIFNG MLAGSDRLKG SHGRDEEFAR ESLCNRWLVC PKKSYEAGAR RRLARAGDEG ERGGKATVDE KYKQWKSLVP
401: VLYDYWFANH NLAWPSLSCR WGPQHEQATY KNRQRLYLSE QTDFSVPNTL VIANCEVVKP RVAAAEHISQ FNEEARSPFV KKYKTIIHPG EVNRIRELPQ
501: NS

Best Arabidopsis Sequence Match ( AT3G13810.4 )
(BLAST)

001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG

Arabidopsis Description

AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.