Factsheet for GSMUA_Achr7P22720_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P22470_001
GSMUA_Achr4P16460_001
GSMUA_Achr5P21440_001
GSMUA_Achr6P27030_001
GSMUA_Achr7P14780_001
GSMUA_Achr7P22720_001
GSMUA_Achr8P09400_001
GSMUA_Achr8P30950_001
GSMUA_Achr9P06650_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03150.1	GSMUA_Achr10P...	AT1G03840.1	17785527
AT5G03150.1	GSMUA_Achr6P27030_001	AT1G03840.1	17785527
AT5G03150.1	GSMUA_Achr7P14780_001	AT1G03840.1	17785527
AT5G03150.1	GSMUA_Achr9P06650_001	AT1G03840.1	17785527
AT5G03150.1	GSMUA_Achr11P...	AT3G54220.1	17785527
AT5G03150.1	GSMUA_Achr5P21440_001	AT3G54220.1	17785527
AT5G03150.1	GSMUA_Achr8P09400_001	AT3G54220.1	17785527
AT5G03150.1	GSMUA_Achr1P22470_001	AT4G37650.1	17785527
AT5G03150.1	GSMUA_Achr4P16460_001	AT4G37650.1	17785527
AT5G03150.1	GSMUA_Achr8P30950_001	AT4G37650.1	17785527
AT5G03150.1	GSMUA_Achr7P22720_001	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P08460_001	Banana	nucleus	40.21	35.87
GSMUA_Achr3P25410_001	Banana	nucleus	39.86	34.36
GSMUA_Achr7P14780_001	Banana	nucleus	41.64	32.77
GSMUA_Achr7P13540_001	Banana	nucleus	40.93	31.51
GSMUA_Achr2P16690_001	Banana	nucleus	40.93	31.25
GSMUA_Achr5P22140_001	Banana	nucleus	41.64	30.71
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	39.5	30.49
GSMUA_Achr2P08910_001	Banana	nucleus	39.5	28.83
GSMUA_Achr7P09150_001	Banana	nucleus	41.28	28.29
GSMUA_Achr9P06650_001	Banana	nucleus	36.3	27.79
GSMUA_Achr3P13990_001	Banana	nucleus	41.28	27.23
GSMUA_Achr10P...	Banana	nucleus	35.94	26.79
GSMUA_Achr11P...	Banana	nucleus	39.15	26.57
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	37.37	26.38
GSMUA_Achr6P27030_001	Banana	nucleus	33.1	26.27
GSMUA_Achr8P10040_001	Banana	nucleus	41.64	26.17
GSMUA_Achr10P...	Banana	nucleus	41.64	26.06
GSMUA_Achr1P17940_001	Banana	nucleus	41.64	25.05
Solyc09g007550.2.1	Tomato	nucleus, plastid	39.86	24.4
PGSC0003DMT400004390	Potato	nucleus	39.5	24.34
GSMUA_Achr5P06450_001	Banana	nucleus	40.93	24.16
GSMUA_Achr7P18610_001	Banana	nucleus	32.38	24.07
GSMUA_Achr6P02490_001	Banana	nucleus	31.67	24.05
PGSC0003DMT400027159	Potato	nucleus	41.99	23.98
VIT_08s0040g02100.t01	Wine grape	nucleus	41.99	23.98
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	32.38	23.76
Solyc10g084180.1.1	Tomato	nucleus	41.64	23.73
GSMUA_Achr1P07110_001	Banana	nucleus	40.93	23.66
GSMUA_Achr10P...	Banana	nucleus	40.21	23.59
GSMUA_Achr5P23130_001	Banana	nucleus	31.67	23.42
GSMUA_Achr7P24170_001	Banana	nucleus	41.28	23.11
GSMUA_Achr9P23870_001	Banana	nucleus	35.59	23.04
AT5G03150.1	Thale cress	nucleus	40.93	22.86
GSMUA_Achr4P07200_001	Banana	nucleus	43.77	22.78
KRG95964	Soybean	nucleus	41.28	22.75
CDY10404	Canola	nucleus	40.93	22.68
CDY11241	Canola	nucleus	40.57	22.66
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	39.5	22.65
Bra005741.1-P	Field mustard	nucleus	40.57	22.62
CDY44344	Canola	nucleus	40.21	22.6
CDX80854	Canola	nucleus	40.57	22.57
GSMUA_Achr4P14030_001	Banana	nucleus	43.42	22.47
CDX70328	Canola	nucleus	40.93	22.37
Solyc06g075250.2.1	Tomato	nucleus, plastid	41.99	22.35
PGSC0003DMT400008694	Potato	nucleus, plastid	41.99	22.35
GSMUA_Achr10P...	Banana	nucleus	31.67	22.31
Bra009549.1-P	Field mustard	nucleus	40.93	22.29
GSMUA_Achr10P...	Banana	nucleus	30.25	22.19
KRH67672	Soybean	nucleus	40.57	22.18
GSMUA_Achr3P20220_001	Banana	nucleus	33.1	21.93
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	38.08	21.88
GSMUA_Achr4P04310_001	Banana	nucleus	36.65	21.78
GSMUA_Achr3P29940_001	Banana	nucleus	44.13	21.34
GSMUA_Achr4P05240_001	Banana	nucleus	37.72	21.2
GSMUA_Achr11P...	Banana	nucleus	38.43	21.14
GSMUA_Achr11P...	Banana	nucleus	39.5	20.83
GSMUA_Achr1P02080_001	Banana	nucleus	40.21	20.66
GSMUA_Achr7P25960_001	Banana	nucleus	43.06	20.44
GSMUA_Achr11P...	Banana	nucleus	40.21	19.96
GSMUA_AchrUn_...	Banana	nucleus	42.7	13.5

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr7G22720_001	EnsemblPlants:GSMUA_Achr7P22720_001	EnsemblPlants:GSMUA_Achr7T22720_001	InterPro:IPR013087
InterPro:JKD-like	UniProt:M0TJV8	PFAM:PF12874	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF42	SMART:SM00355	SUPFAM:SSF57667	TMHMM:TMhelix	UniParc:UPI0002963E17	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G22720_001]

Coordinates

chr7:-:25122919..25124430

Molecular Weight (calculated)

31976.6 Da

IEP (calculated)

10.118

GRAVY (calculated)

-0.475

Length

281 amino acids

Sequence
(BLAST)

001: MCWFGPRHPQ MGGRLISLAR HIRRPHSQGP VSYSEFVHYH PNPNPNPNPS NDRDPLIDRR PKRKRNLPGT PGKTLAEVIA LSPGTLLAAS SFVCEVCGKE
101: FRRDQNLQIH RRGHNLPWNF AAKKASSDEA AARARRRVYV CPEASCVYHD PSRALGDVTG IKKHYSRKHG EKKWECERCP KKYAVRADWK AHTKICGTRE
201: YECHCGTLFA SRKDSLLAHQ AACEATATTT TTAEEREAST IIPYILIFIL LKIKIFYCVL FFLILSIQLI KISNIFNDKL K

Best Arabidopsis Sequence Match ( AT3G45260.1 )
(BLAST)

001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ

Arabidopsis Description

IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.