Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009549.1-P | Field mustard | nucleus | 97.86 | 97.48 |
| CDY10404 | Canola | nucleus | 93.19 | 94.48 |
| AT5G03150.1 | Thale cress | nucleus | 87.74 | 89.66 |
| CDY11241 | Canola | nucleus | 87.55 | 89.46 |
| CDX80854 | Canola | nucleus | 87.55 | 89.11 |
| CDY44344 | Canola | nucleus | 86.58 | 89.0 |
| CDY09390 | Canola | nucleus | 19.07 | 82.35 |
| CDY04118 | Canola | nucleus | 19.07 | 82.35 |
| CDY14910 | Canola | nucleus | 18.09 | 69.92 |
| CDY37489 | Canola | nucleus | 24.9 | 69.57 |
| CDY72283 | Canola | nucleus | 24.51 | 66.67 |
| CDY53540 | Canola | nucleus | 24.12 | 63.92 |
| CDY04117 | Canola | nucleus | 25.68 | 61.68 |
| CDY70142 | Canola | nucleus | 20.04 | 56.59 |
| VIT_08s0040g02100.t01 | Wine grape | nucleus | 52.14 | 54.47 |
| KRH67672 | Soybean | nucleus | 50.39 | 50.39 |
| KRG95964 | Soybean | nucleus | 49.61 | 50.0 |
| PGSC0003DMT400004390 | Potato | nucleus | 42.8 | 48.25 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 42.8 | 47.93 |
| CDX97281 | Canola | nucleus, plastid | 31.91 | 42.6 |
| CDX96046 | Canola | nucleus | 19.26 | 42.49 |
| GSMUA_Achr7P22720_001 | Banana | mitochondrion | 22.37 | 40.93 |
| CDX75732 | Canola | nucleus | 35.02 | 40.63 |
| CDX77936 | Canola | nucleus | 34.44 | 40.6 |
| CDX91304 | Canola | nucleus, plastid | 31.91 | 40.59 |
| CDY24490 | Canola | nucleus | 34.24 | 40.46 |
| CDY59418 | Canola | nucleus | 31.91 | 39.71 |
| CDX82515 | Canola | nucleus | 34.05 | 39.68 |
| CDY18188 | Canola | nucleus | 36.97 | 39.67 |
| CDX89862 | Canola | nucleus | 36.97 | 39.58 |
| Solyc10g084180.1.1 | Tomato | nucleus | 37.35 | 38.95 |
| CDX86010 | Canola | nucleus | 33.85 | 38.84 |
| PGSC0003DMT400027159 | Potato | nucleus | 37.16 | 38.82 |
| CDY67009 | Canola | nucleus | 35.8 | 38.66 |
| CDY53836 | Canola | nucleus | 34.05 | 38.63 |
| CDY22307 | Canola | nucleus | 34.82 | 38.58 |
| CDX94759 | Canola | nucleus | 34.82 | 38.58 |
| CDX97521 | Canola | nucleus | 36.19 | 38.35 |
| CDY32514 | Canola | nucleus | 36.38 | 38.16 |
| CDY55238 | Canola | nucleus | 35.8 | 37.86 |
| CDY51742 | Canola | nucleus | 35.6 | 37.81 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 38.52 | 37.5 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 38.13 | 37.12 |
| CDY17615 | Canola | nucleus | 37.55 | 36.62 |
| CDY17440 | Canola | nucleus | 34.05 | 36.61 |
| CDX81653 | Canola | nucleus | 33.07 | 36.4 |
| CDY03081 | Canola | nucleus | 36.97 | 36.26 |
| CDX81372 | Canola | nucleus | 34.24 | 35.99 |
| CDY57128 | Canola | nucleus | 34.44 | 35.98 |
| CDY15814 | Canola | nucleus | 32.88 | 35.73 |
| CDY45271 | Canola | nucleus | 28.79 | 35.58 |
| CDY17614 | Canola | nucleus, plastid | 35.41 | 35.48 |
| CDY03080 | Canola | nucleus, plastid | 35.02 | 34.88 |
| CDY09391 | Canola | nucleus | 38.33 | 34.74 |
| CDY15811 | Canola | nucleus | 38.13 | 34.51 |
| CDY45270 | Canola | nucleus | 29.18 | 33.33 |
| CDY70938 | Canola | cytosol, nucleus | 15.95 | 30.04 |
| CDY51986 | Canola | nucleus | 21.01 | 28.57 |
| CDY36123 | Canola | nucleus | 21.01 | 28.57 |
| CDY04204 | Canola | nucleus | 19.65 | 28.13 |
| CDX84974 | Canola | nucleus | 20.82 | 27.94 |
| CDY60366 | Canola | nucleus | 20.62 | 27.68 |
| CDY04203 | Canola | plastid | 20.23 | 27.01 |
| CDY09400 | Canola | nucleus | 22.37 | 26.26 |
| CDY07400 | Canola | nucleus | 21.01 | 26.15 |
| CDY12268 | Canola | nucleus | 22.37 | 25.78 |
| CDY67587 | Canola | cytosol, nucleus | 11.28 | 25.78 |
| CDY17620 | Canola | nucleus | 21.98 | 25.45 |
| CDY15800 | Canola | nucleus | 21.79 | 25.34 |
| CDY60095 | Canola | nucleus | 21.79 | 25.34 |
| CDY04102 | Canola | nucleus | 21.79 | 24.94 |
| CDY63960 | Canola | nucleus | 21.79 | 24.83 |
| CDY68983 | Canola | nucleus | 18.29 | 24.04 |
Protein Annotations
| EnsemblPlants:CDX70328 | EnsemblPlantsGene:GSBRNA2T00136485001 | Gene3D:3.30.160.60 | GO:A0A078C5Q1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:JKD-like | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF42 | PFscan:PS50157 | ProteinID:CDX70328 | ProteinID:CDX70328.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EE10D7 | MapMan:15.5.15 | : | : |
Description
BnaA10g26770D
Coordinates
chrLK031790:-:4144915..4148710
Molecular Weight (calculated)
56713.6 Da
IEP (calculated)
10.245
GRAVY (calculated)
-0.766
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMIPGDPFS ISSSMGGFVH QEQHLHHLQQ HIQDINPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSNKELKQ RSNKEVIKKK VYICPIKTCV HHDSSRALGD LTGIKKHYSR KHGEKKFKCE KCSKKYAVQS DWKAHAKTCG TREYKCDCGT
201: LFSRKDSFIT HRAFCDALTE EGARMSSLSN NSAISTTTMT TNLNFGNDSH VMNNSNLPHG FVHRGVHHPD INAAISQFGL GFGHDLTGMH PQGLSEMVQM
301: TSSGNHHLFP LSSSSVLPDF SGHHHNQQFQ IPTTSTTSQQ TSASLPSLQQ QHQTLKDSSF SPLFSSSSET KQNKPLSPMS ATALLQKAAQ MGSTRSNSTT
401: APSIFAGPTM TSSSSAASPP PRSSSPMMIQ QQLNNNFNTN VPREIHNLAP PSSGVTTNNV DNNHRFQSNR SGITPVQQMG LTRDFLGVSN EHHPHQTGHR
501: PFLPQELARF APSG
101: RRGHNLPWKL KQRSNKELKQ RSNKEVIKKK VYICPIKTCV HHDSSRALGD LTGIKKHYSR KHGEKKFKCE KCSKKYAVQS DWKAHAKTCG TREYKCDCGT
201: LFSRKDSFIT HRAFCDALTE EGARMSSLSN NSAISTTTMT TNLNFGNDSH VMNNSNLPHG FVHRGVHHPD INAAISQFGL GFGHDLTGMH PQGLSEMVQM
301: TSSGNHHLFP LSSSSVLPDF SGHHHNQQFQ IPTTSTTSQQ TSASLPSLQQ QHQTLKDSSF SPLFSSSSET KQNKPLSPMS ATALLQKAAQ MGSTRSNSTT
401: APSIFAGPTM TSSSSAASPP PRSSSPMMIQ QQLNNNFNTN VPREIHNLAP PSSGVTTNNV DNNHRFQSNR SGITPVQQMG LTRDFLGVSN EHHPHQTGHR
501: PFLPQELARF APSG
001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
Arabidopsis Description
JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.