CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75732	Canola	nucleus	86.62	86.23
Bra001523.1-P	Field mustard	nucleus	99.32	85.55
CDY37489	Canola	nucleus	35.37	84.78
CDY04118	Canola	nucleus	22.45	83.19
CDY09390	Canola	nucleus	22.0	81.51
CDY51742	Canola	nucleus	85.03	77.48
CDX97521	Canola	nucleus	82.54	75.05
CDY55238	Canola	nucleus	82.09	74.49
AT3G13810.2	Thale cress	nucleus	82.99	71.21
CDY14910	Canola	nucleus	21.09	69.92
CDY70142	Canola	nucleus	27.44	66.48
CDY72283	Canola	nucleus	28.12	65.61
CDY53540	Canola	nucleus	26.76	60.82
CDY04117	Canola	nucleus	27.66	57.01
CDY70938	Canola	cytosol, nucleus	33.56	54.21
CDX97281	Canola	nucleus, plastid	36.73	42.08
CDX96046	Canola	nucleus	21.77	41.2
CDX91304	Canola	nucleus, plastid	37.19	40.59
CDY24490	Canola	nucleus	37.87	38.39
CDX77936	Canola	nucleus	37.87	38.3
CDX94759	Canola	nucleus	39.23	37.28
CDX89862	Canola	nucleus	40.36	37.08
CDY18188	Canola	nucleus	40.14	36.95
CDY32514	Canola	nucleus	41.04	36.94
CDY22307	Canola	nucleus	38.78	36.85
CDX86010	Canola	nucleus	36.96	36.38
VIT_09s0002g02300.t01	Wine grape	nucleus	43.76	36.28
CDY59418	Canola	nucleus	33.79	36.08
CDY53836	Canola	nucleus	36.73	35.76
CDY11241	Canola	nucleus	40.36	35.39
CDY67009	Canola	nucleus	38.1	35.29
CDX80854	Canola	nucleus	40.36	35.25
CDY44344	Canola	nucleus	39.91	35.2
CDY17440	Canola	nucleus	37.64	34.73
CDY10404	Canola	nucleus	39.91	34.71
CDY17615	Canola	nucleus	41.04	34.35
CDY03081	Canola	nucleus	40.59	34.16
CDX81372	Canola	nucleus	37.87	34.15
CDX70328	Canola	nucleus	39.68	34.05
CDY45271	Canola	nucleus	31.75	33.65
CDY57128	Canola	nucleus	37.41	33.54
CDY17614	Canola	nucleus, plastid	37.87	32.55
CDY15814	Canola	nucleus	34.69	32.35
CDX81653	Canola	nucleus	34.24	32.33
CDY03080	Canola	nucleus, plastid	37.64	32.17
CDY09391	Canola	nucleus	40.59	31.57
CDY45270	Canola	nucleus	32.2	31.56
CDY15811	Canola	nucleus	40.14	31.16
CDY04204	Canola	nucleus	23.13	28.41
CDX84974	Canola	nucleus	24.26	27.94
CDY60366	Canola	nucleus	24.04	27.68
CDY51986	Canola	nucleus	23.13	26.98
CDY36123	Canola	nucleus	23.13	26.98
CDY04203	Canola	plastid	23.36	26.75
CDY67587	Canola	cytosol, nucleus	13.38	26.22
CDY07400	Canola	nucleus	24.04	25.67
CDY09400	Canola	nucleus	25.17	25.34
CDY15800	Canola	nucleus	24.94	24.89
CDY17620	Canola	nucleus	24.94	24.77
CDY60095	Canola	nucleus	24.49	24.43
CDY04102	Canola	nucleus	24.72	24.28
CDY63960	Canola	nucleus	24.49	23.95
CDY12268	Canola	nucleus	24.04	23.77
CDY68983	Canola	nucleus	20.18	22.76

Protein Annotations

EnsemblPlants:CDX82515	EnsemblPlantsGene:GSBRNA2T00137663001	Gene3D:3.30.160.60	GO:A0A078D0D1	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593
PANTHER:PTHR10593:SF49	PFAM:PF12171	PFscan:PS50157	ProteinID:CDX82515	ProteinID:CDX82515.1	ScanProsite:PS00028
SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0004EE80AA	MapMan:15.5.15	:

Description

BnaA03g33060D

Coordinates

chrLK031828:-:1666316..1670560

Molecular Weight (calculated)

48687.9 Da

IEP (calculated)

9.197

GRAVY (calculated)

-0.816

Length

441 amino acids

Sequence
(BLAST)

001: MSNLTSASGD QTSVSSGNRT EAKQQQRNQP GNPDPESEVI TLSPKTLMAR NRFVCEICNK GFQRDQNLQL HKRGHNLPWK LKQRSNKEVI RKKVYVCPEA
101: SCVHHDPTRA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA VQSDCKAHSK TCGTKEYRCD CGTIFSRRDS FTTHRAFCEA LAKETAREVV IPQEQNHQPN
201: PILVHQSTFH HQHHHQAQPN MNFSSSNTSS NHLHTFSVKK EQQQSNDHII NYHHQNIPPW LAPQDLTFSN PNPNNGGGGL FSLAASPAMS ATALLQKAAQ
301: MGSKKTPPLP PTTDFERSAH HNTLTTTMAA MMTSPSGYIS SNNNNQVLFQ GYNASDFDHH GGEEAFDDTF SAFLRTNADT TTAGSDKKKS GGGGGVGEGL
401: TRDFLGIRPL MSHNEILSIA GLGNCISGAA SNQLHPKPWQ G

Best Arabidopsis Sequence Match ( AT3G13810.5 )
(BLAST)

001: MLLHQHQQPQ QDENMSNLTS ASGDQASVSS GNITEASGSN YFPHHQQQQE QQQQQLVVPD SQTQKKRRNQ PGNPDPESEV IALSPKTLMA TNRFVCEICN
101: KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV IRKKVYVCPE ASCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDCKAHS KTCGTKEYRC
201: DCGTLFSRRD SFITHRAFCE ALAEETAREV VIPQNQNNNQ PNPLLIHQSA SHPHHHHQTQ PTINVSSSSS SSHNHNIINS LHFDTNNGNT NNSNNSNNHL
301: HTFPMKKEQQ SNDHIMNYHH SIIPPWLAPQ PHALTSSNPN PSNGGGGGGS LFSLASPAMS ATALLQKAAQ MGSTKTPPLP PTTAYERSTH NNNLTTTMAA
401: MMTSPSGFIS SNNNNHVLFQ DYNASGFDNH GREEAFDDTF GGFLRTNEVT AAAGSEKSTK SGGGEGLTRD FLGLRPLMSH NEILSFAGLG SCINSSASDQ
501: LHPKPWQG

Arabidopsis Description

AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.