Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09390 | Canola | nucleus | 98.32 | 98.32 |
| CDY14910 | Canola | nucleus | 67.23 | 60.15 |
| CDY53540 | Canola | nucleus | 93.28 | 57.22 |
| CDY37489 | Canola | nucleus | 84.87 | 54.89 |
| CDY04117 | Canola | nucleus | 96.64 | 53.74 |
| CDY72283 | Canola | nucleus | 83.19 | 52.38 |
| CDY70142 | Canola | nucleus | 61.34 | 40.11 |
| CDX96046 | Canola | nucleus | 63.03 | 32.19 |
| KRG89168 | Soybean | nucleus, plastid | 91.6 | 31.32 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 89.08 | 29.12 |
| CDY59418 | Canola | nucleus | 92.44 | 26.63 |
| GSMUA_Achr5P11770_001 | Banana | nucleus, plastid | 87.39 | 26.13 |
| CDX97281 | Canola | nucleus, plastid | 81.51 | 25.19 |
| CDY17440 | Canola | nucleus | 100.0 | 24.9 |
| CDY15814 | Canola | nucleus | 98.32 | 24.74 |
| GSMUA_Achr3P13990_001 | Banana | nucleus | 88.24 | 24.65 |
| CDX91304 | Canola | nucleus, plastid | 81.51 | 24.01 |
| GSMUA_Achr9P23870_001 | Banana | nucleus | 86.55 | 23.73 |
| CDX81653 | Canola | nucleus | 92.44 | 23.55 |
| CDY45271 | Canola | nucleus | 80.67 | 23.08 |
| CDY24490 | Canola | nucleus | 84.03 | 22.99 |
| CDX77936 | Canola | nucleus | 84.03 | 22.94 |
| GSMUA_Achr1P17940_001 | Banana | nucleus | 89.92 | 22.91 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 98.32 | 22.67 |
| CDY17614 | Canola | nucleus, plastid | 97.48 | 22.61 |
| CDX75732 | Canola | nucleus | 84.03 | 22.57 |
| CDY03080 | Canola | nucleus, plastid | 97.48 | 22.48 |
| CDX82515 | Canola | nucleus | 83.19 | 22.45 |
| GSMUA_Achr4P04310_001 | Banana | nucleus | 88.24 | 22.2 |
| CDX86010 | Canola | nucleus | 83.19 | 22.1 |
| GSMUA_Achr1P07110_001 | Banana | nucleus | 89.92 | 22.02 |
| Zm00001d021403_P001 | Maize | nucleus | 89.08 | 21.9 |
| CDY45270 | Canola | nucleus | 82.35 | 21.78 |
| CDY03081 | Canola | nucleus | 95.8 | 21.76 |
| CDY53836 | Canola | nucleus | 82.35 | 21.63 |
| GSMUA_Achr4P11810_001 | Banana | mitochondrion, nucleus | 89.08 | 21.63 |
| CDY17615 | Canola | nucleus | 95.8 | 21.63 |
| GSMUA_Achr10P... | Banana | nucleus | 85.71 | 21.29 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 87.39 | 21.27 |
| CDX94759 | Canola | nucleus | 82.35 | 21.12 |
| CDY22307 | Canola | nucleus | 82.35 | 21.12 |
| CDY67009 | Canola | nucleus | 84.03 | 21.01 |
| CDY04204 | Canola | nucleus | 63.03 | 20.89 |
| CDY18188 | Canola | nucleus | 84.03 | 20.88 |
| CDY51742 | Canola | nucleus | 84.87 | 20.87 |
| CDY55238 | Canola | nucleus | 84.87 | 20.78 |
| Solyc04g008500.2.1 | Tomato | nucleus | 89.92 | 20.7 |
| PGSC0003DMT400075837 | Potato | nucleus | 89.92 | 20.66 |
| CDX89862 | Canola | nucleus | 83.19 | 20.62 |
| CDX97521 | Canola | nucleus | 84.03 | 20.62 |
| KRH49489 | Soybean | nucleus, plastid | 91.6 | 20.45 |
| GSMUA_Achr4P05240_001 | Banana | nucleus | 85.71 | 20.4 |
| CDY09391 | Canola | nucleus | 96.64 | 20.28 |
| CDY15811 | Canola | nucleus | 96.64 | 20.25 |
| CDY32514 | Canola | nucleus | 83.19 | 20.2 |
| KRH34792 | Soybean | nucleus | 94.12 | 20.18 |
| KRH49485 | Soybean | nucleus | 91.6 | 20.07 |
| KRG91985 | Soybean | nucleus | 94.12 | 20.0 |
| OQU89911 | Sorghum | nucleus, plastid | 89.08 | 19.89 |
| KRG89167 | Soybean | nucleus, plastid | 91.6 | 19.85 |
| CDX81372 | Canola | nucleus | 81.51 | 19.84 |
| Os09t0555700-02 | Rice | nucleus | 89.08 | 19.81 |
| CDY57128 | Canola | nucleus | 81.51 | 19.72 |
| CDY44344 | Canola | nucleus | 82.35 | 19.6 |
| KRG90705 | Soybean | nucleus | 93.28 | 19.58 |
| GSMUA_Achr11P... | Banana | nucleus | 87.39 | 19.51 |
| CDY11241 | Canola | nucleus | 82.35 | 19.48 |
| CDY04203 | Canola | plastid | 63.03 | 19.48 |
| TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 89.08 | 19.45 |
| KRH36039 | Soybean | nucleus | 93.28 | 19.44 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 89.08 | 19.41 |
| CDX80854 | Canola | nucleus | 82.35 | 19.41 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 89.08 | 19.38 |
| CDY10404 | Canola | nucleus | 82.35 | 19.33 |
| CDY36123 | Canola | nucleus | 61.34 | 19.31 |
| CDY51986 | Canola | nucleus | 61.34 | 19.31 |
| KXG25416 | Sorghum | nucleus | 89.08 | 19.17 |
| Os08t0554400-02 | Rice | nucleus | 88.24 | 19.16 |
| CDX70328 | Canola | nucleus | 82.35 | 19.07 |
| CDX84974 | Canola | nucleus | 61.34 | 19.06 |
| CDY60366 | Canola | nucleus | 61.34 | 19.06 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 91.6 | 19.06 |
| GSMUA_Achr1P02080_001 | Banana | nucleus | 87.39 | 19.01 |
| GSMUA_Achr11P... | Banana | nucleus | 78.99 | 18.4 |
| GSMUA_Achr11P... | Banana | nucleus | 86.55 | 18.2 |
| CDY07400 | Canola | nucleus | 63.03 | 18.16 |
| CDY68983 | Canola | nucleus | 59.66 | 18.16 |
| Zm00001d031992_P001 | Maize | nucleus | 89.92 | 17.69 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 84.87 | 17.53 |
| Zm00001d017560_P001 | Maize | nucleus | 85.71 | 17.53 |
| TraesCS6A01G254500.1 | Wheat | nucleus | 84.87 | 17.47 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 84.87 | 17.47 |
| CDY09400 | Canola | nucleus | 63.87 | 17.35 |
| CDY15800 | Canola | nucleus | 63.87 | 17.19 |
| CDY60095 | Canola | nucleus | 63.87 | 17.19 |
| KXG31026 | Sorghum | nucleus | 85.71 | 17.14 |
| CDY17620 | Canola | nucleus | 63.87 | 17.12 |
| EES11271 | Sorghum | nucleus | 85.71 | 17.03 |
| Zm00001d026113_P006 | Maize | nucleus | 85.71 | 17.03 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 87.39 | 16.99 |
| Os02t0672100-01 | Rice | nucleus | 86.55 | 16.75 |
| CDY04102 | Canola | nucleus | 63.03 | 16.7 |
| Os04t0566400-02 | Rice | nucleus | 85.71 | 16.64 |
| CDY63960 | Canola | nucleus | 63.03 | 16.63 |
| CDY12268 | Canola | nucleus | 61.34 | 16.37 |
| KXG36163 | Sorghum | nucleus | 79.83 | 16.32 |
| Zm00001d002654_P003 | Maize | nucleus | 85.71 | 16.11 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 87.39 | 15.71 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 87.39 | 15.69 |
| Zm00001d006319_P001 | Maize | nucleus | 72.27 | 15.38 |
| CDY70938 | Canola | cytosol, nucleus | 21.01 | 9.16 |
| CDY67587 | Canola | cytosol, nucleus | 12.61 | 6.67 |
Protein Annotations
| EnsemblPlants:CDY04118 | EnsemblPlantsGene:GSBRNA2T00117776001 | Gene3D:3.30.160.60 | GO:A0A078EX39 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF50 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY04118 | ProteinID:CDY04118.1 | ScanProsite:PS00028 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EF09E7 | MapMan:15.5.15 | : | : | : |
Description
BnaA09g18960D
Coordinates
chrLK031949:-:282104..283535
Molecular Weight (calculated)
14100.1 Da
IEP (calculated)
10.341
GRAVY (calculated)
-1.134
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNRFICDV CKKGFQREQN LQLHRRGHNL PWKLKQKSTK EVKRKVYLCP EPTCVHHDPS RALGDLTGIK KHYYRKHGEK KWKCDKCSKR YAVQSDWKAH
101: SKTCGTKEYR CDCGTIFSR
101: SKTCGTKEYR CDCGTIFSR
001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
Arabidopsis Description
IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.