CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04118	Canola	nucleus	16.32	79.83
CDY09390	Canola	nucleus	15.98	78.15
Zm00001d006319_P001	Maize	nucleus	61.0	63.51
CDY53540	Canola	nucleus	19.76	59.28
CDY04117	Canola	nucleus	20.96	57.01
KRG89168	Soybean	nucleus, plastid	30.24	50.57
OQU89911	Sorghum	nucleus, plastid	44.5	48.59
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	29.55	47.25
GSMUA_Achr4P04310_001	Banana	nucleus	34.19	42.07
KXG25416	Sorghum	nucleus	37.8	39.78
VIT_01s0010g02100.t01	Wine grape	nucleus	38.32	38.99
KRH49489	Soybean	nucleus, plastid	35.4	38.65
KRH49485	Soybean	nucleus	35.4	37.94
KRG89167	Soybean	nucleus, plastid	35.74	37.89
CDY45271	Canola	nucleus	26.98	37.74
KRG90705	Soybean	nucleus	36.6	37.57
PGSC0003DMT400075837	Potato	nucleus	33.33	37.45
KRG91985	Soybean	nucleus	35.91	37.32
KRH36039	Soybean	nucleus	36.6	37.3
KRH34792	Soybean	nucleus	35.57	37.3
Solyc04g008500.2.1	Tomato	nucleus	32.99	37.14
Bra026204.1-P	Field mustard	nucleus, plastid	28.52	36.89
CDY45270	Canola	nucleus	28.35	36.67
EES02307	Sorghum	nucleus	30.76	35.94
GSMUA_Achr11P...	Banana	nucleus	31.27	35.62
GSMUA_Achr11P...	Banana	nucleus	32.3	35.27
CDY17440	Canola	nucleus	28.69	34.94
EES02157	Sorghum	nucleus	28.87	34.93
KXG38489	Sorghum	nucleus	25.43	34.58
EES11271	Sorghum	nucleus	35.22	34.22
CDY59418	Canola	nucleus	24.23	34.14
Bra026203.1-P	Field mustard	nucleus, plastid	26.98	33.84
KXG31026	Sorghum	nucleus	34.54	33.78
AT2G02080.3	Thale cress	nucleus, plastid	29.9	33.72
KXG30322	Sorghum	nucleus	27.32	33.47
CDY15814	Canola	nucleus	27.15	33.4
CDY17614	Canola	nucleus, plastid	29.38	33.33
EES00944	Sorghum	nucleus	27.49	33.26
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	37.63	33.13
EES05153	Sorghum	nucleus	27.84	32.99
Bra024833.1-P	Field mustard	plastid	29.04	32.94
Bra026616.1-P	Field mustard	nucleus	28.87	32.88
CDY03080	Canola	nucleus, plastid	29.04	32.75
CDY03081	Canola	nucleus	29.21	32.44
CDY17615	Canola	nucleus	29.04	32.07
CDX81653	Canola	nucleus	25.6	31.91
Bra026819.1-P	Field mustard	nucleus	25.6	31.91
EER95332	Sorghum	nucleus	28.18	31.24
AT1G14580.3	Thale cress	nucleus	25.6	30.98
CDY15811	Canola	nucleus	29.9	30.63
Bra024834.1-P	Field mustard	nucleus, plastid	29.04	30.62
CDY09391	Canola	nucleus	29.73	30.51
EES04172	Sorghum	nucleus	26.8	30.0
Bra023223.1-P	Field mustard	plastid	24.57	29.79
Bra040974.1-P	Field mustard	nucleus, plastid	29.9	29.74
Bra026617.1-P	Field mustard	nucleus	29.73	29.32
AT2G02070.2	Thale cress	nucleus	30.24	29.24
CDY12268	Canola	nucleus	21.31	27.8
CDY68983	Canola	nucleus	17.18	25.58
KXG39813	Sorghum	nucleus, plastid	19.59	24.84
EER96827	Sorghum	nucleus	21.13	24.65
EES13982	Sorghum	nucleus	21.99	23.88
EER97442	Sorghum	nucleus	27.15	20.15

Protein Annotations

EnsemblPlants:KXG36163	EnsemblPlantsGene:SORBI_3002G293100	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF66	PFAM:PF12874
PFscan:PS50157	ProteinID:KXG36162.1	ProteinID:KXG36163	ProteinID:KXG36163.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00081AD037	UniProt:A0A1B6QE25	MapMan:15.5.15	:

Description

hypothetical protein

Coordinates

chr2:-:67076024..67082737

Molecular Weight (calculated)

61098.7 Da

IEP (calculated)

8.265

GRAVY (calculated)

-0.427

Length

582 amino acids

Sequence
(BLAST)

001: MPSSSSAPFF RTSDMQMQPQ GSSLEQNSKK KRNRRPGNPR PDAEVVALSP QTLLATNRFV CPVCQKGFQR DQNLQLHLRG HNMPWKLKPK NPKEACRRVY
101: LCPEPTCVHH DPSRALGDLT GIKKHYSRKH GEKNLKCDKC NKRYAVESDW KAHCKTCGTR EYRCECDALF SRKDSFITHR AMCGTALAAD RTKTAQMPPP
201: CAGLYVGSDS LGLSGGFADE GQSSSAAEAS QMHSFITHRA ICDALALKSA QMPPLGAGLY VGTGSKSLGL SGTAAQMHGF AHQASQSSSA AAAVQFDHIM
301: PSSSGSSSMF RSQASASSSS YFLGGGAPPT AQDFSEDCSQ GSHQAPLLHG KAPFHGLMQL PEQHHQPGPG SSNNAAFANG NNLLNLGFFS AGNNGGGTFG
401: SQDARLVIQD QFNVTGGGSG STAEHGNLMA ASVGSHLSGG FPSLYNNSSA SAAKVQNSAT ALLMKAAQMG STSSTTTHTG SSSLLPVACF TGTVSGQGTS
501: RAAEEGMTQE AHFHDLIMNS LPLMGGTGTD GFAGTAGMAG VDDGNLSTRD FLGVGRDDDA MAPTAGLPNM GALDPTQMKW FM

Best Arabidopsis Sequence Match ( AT1G14580.1 )
(BLAST)

001: MSSSYNTIAL SSTPTFLLSS AAAGPGPNNF NRQEAAMTMV QQQPTSSVAP PPKKRRNQPG NPNPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH
101: RRGHNLPWKL KQKSNKEVRR KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTKEYRCDCG TIFSRRDSYI
201: THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ
301: GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ
401: QGRSPSLFDL HFANNLSMGG SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA

Arabidopsis Description

C2H2-like zinc finger protein [Source:TAIR;Acc:AT1G14580]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.