CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94653
EES02045
EES09233
EES14166
EES16518
KXG21076
KXG22822
KXG22896
KXG26019
OQU77884
OQU77885
OQU82754
OQU83580
OQU90176

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	KXG22896	AT3G54220.1	17785527
AT1G03840.1	OQU82754	AT3G54220.1	17785527
AT1G03840.1	EER94653	AT4G37650.1	17785527
AT1G03840.1	OQU90176	AT4G37650.1	17785527
AT5G44160.1	EES02045	AT1G50420.1	21798944
AT5G44160.1	EES09233	AT1G50420.1	21798944
AT5G44160.1	EES16518	AT1G50420.1	21798944
AT5G44160.1	KXG22822	AT1G50420.1	21798944
AT5G44160.1	OQU77884	AT1G50420.1	21798944
AT5G44160.1	OQU77885	AT1G50420.1	21798944
AT5G44160.1	EES14166	AT3G12280.1	22921914
AT5G44160.1	KXG21076	AT3G12280.1	22921914
AT5G44160.1	KXG26019	AT3G12280.1	22921914
AT5G44160.1	OQU83580	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006682_P001	Maize	nucleus	78.83	83.29
Zm00001d021932_P001	Maize	nucleus	85.46	82.21
Os07t0581366-00	Rice	cytosol, nucleus	57.02	70.5
CDY14910	Canola	nucleus	11.86	69.92
Bra036013.1-P	Field mustard	nucleus	13.14	65.19
CDY72283	Canola	nucleus	15.18	62.96
TraesCS2B01G218900.1	Wheat	nucleus	61.48	60.1
TraesCS2A01G188400.2	Wheat	nucleus	61.86	58.43
TraesCS2D01G199300.3	Wheat	nucleus	61.86	57.4
HORVU2Hr1G036710.3	Barley	nucleus	56.63	51.15
VIT_12s0028g03030.t01	Wine grape	nucleus	23.21	42.62
EER95332	Sorghum	nucleus	27.81	41.52
AT5G44160.1	Thale cress	nucleus	23.09	38.84
KRH25657	Soybean	nucleus	22.96	38.22
KRH55868	Soybean	nucleus	23.09	38.19
KRH22332	Soybean	nucleus	23.09	38.19
Bra033724.1-P	Field mustard	nucleus	22.58	38.15
CDY22307	Canola	nucleus	22.58	38.15
KRH49655	Soybean	nucleus	17.6	38.12
CDX94759	Canola	nucleus	22.45	37.93
KRH26995	Soybean	nucleus	23.21	37.92
EES02157	Sorghum	nucleus	22.58	36.8
KXG38489	Sorghum	nucleus	19.77	36.22
CDY18188	Canola	nucleus	21.94	35.91
Bra015271.1-P	Field mustard	nucleus	21.94	35.68
CDX89862	Canola	nucleus	21.81	35.62
AT1G03840.1	Thale cress	nucleus	22.96	35.57
CDY32514	Canola	nucleus	22.19	35.51
Bra032541.1-P	Field mustard	nucleus	22.19	35.51
EES02307	Sorghum	nucleus	22.45	35.34
EES00944	Sorghum	nucleus	21.05	34.3
PGSC0003DMT400024272	Potato	nucleus	21.56	34.14
Solyc07g053570.2.1	Tomato	nucleus	21.81	34.06
EES04172	Sorghum	nucleus	21.94	33.08
KXG30322	Sorghum	nucleus	19.9	32.84
EES05153	Sorghum	nucleus	20.28	32.38
KXG25416	Sorghum	nucleus	22.83	32.37
OQU89911	Sorghum	nucleus, plastid	21.56	31.71
KXG31026	Sorghum	nucleus	23.21	30.59
EES11271	Sorghum	nucleus	23.21	30.38
KXG39813	Sorghum	nucleus, plastid	15.94	27.23
KXG36163	Sorghum	nucleus	20.15	27.15
EER96827	Sorghum	nucleus	15.56	24.45
EES13982	Sorghum	nucleus	16.2	23.69

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8078954	UniProt:C5XCG0	EnsemblPlants:EER97442	ProteinID:EER97442
ProteinID:EER97442.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF29	SMART:SM00355	EnsemblPlantsGene:SORBI_3002G353700	SUPFAM:SSF57667
unigene:Sbi.8463	UniParc:UPI0001A837BA	RefSeq:XP_002460921.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:71688818..71692504

Molecular Weight (calculated)

86770.9 Da

IEP (calculated)

6.985

GRAVY (calculated)

-0.916

Length

784 amino acids

Sequence
(BLAST)

001: MQPPHPEAGP EQEAVPAPVK KKRNLPGTPD PDAEVIALSP GTLLATNRFV CEVCGKGFQR DQNLQLHRRG HNLPWRLRQR GPGAAPPRRR VYVCPEPGCV
101: HHAPTRALGD LTGIKKHFCR KHGEKRWACP RCGKRYAVQA DLKAHAKTCG TREYRCDCGT LFTRRDSFVT HRAFCGALGE ETGRVLAPPA PPSPRPPDLE
201: AENVDKDKDN DKGEEENEDS AVAEVEEPQR VEVVPEEPQR IPSPPPLPQE PPTHPSPPPL PQEPPRHQSP PPLPQEPPRR LSPPPLPKEP PRRLSPPPLP
301: KEPRCRPTPP PLPKEPQRLP FPLEQQPVVA LVPNLDEPEV VAVPTVTAKI EDEADQDEDT CFQEADQYKD AELEVSNLLD KDTPMPPCLL PSPSEAIGTD
401: GSSTTCGAGG SVSNSIAPST TTNTFAGLFA SATTSTTSQS RSLRDLIGVD PTFLCLAIGA PSMFPQTSAS NSGTFAPPPA PHMSATALLQ KATEAGATQS
501: SSSFLKEFGL ASSSLSSPPS KQQPQGRIAD TSTEPWQYRR NQQMEMERHQ SHQRREMESS SQPWHPRSTQ QMEMERHHRN HQQREMESSS QQWHHHRNHQ
601: QREMESSSQQ WHHHRNDQQM VGLESYRSNQ QMQMESSSQR WLHPRSYQQQ MEVDSSLQRW PHHRSNQQQM EMMERHHRSN QQQMERESRA MLSGGLGLGL
701: AYESGNSGLP DLVMGPSPLF GPKPAATLDF LGLGIGGTMG GSTVANRGLP ALMIGGELDM GSSAQVPAPW EDAKRKTNNG RTIL

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.