Factsheet for TraesCS2B01G218900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G192600.1
TraesCS2A01G532900.1
TraesCS2B01G214600.1
TraesCS2B01G562400.1
TraesCS2D01G055700.1
TraesCS2D01G194800.1
TraesCS2D01G534700.1
TraesCS3A01G487500.1
TraesCS3B01G535100.1
TraesCS3D01G482600.1
TraesCS4A01G143200.1
TraesCS4A01G185900.1
TraesCS4A01G191300.1
TraesCS4B01G124000.1
TraesCS4B01G133000.1
TraesCS4B01G162200.1
TraesCS4D01G122000.1
TraesCS4D01G127800.2
TraesCS4D01G159600.1
TraesCS5A01G135000.1
TraesCS5A01G144000.1
TraesCS5B01G133800.1
TraesCS5B01G143100.1
TraesCS5D01G139500.1
TraesCS5D01G148000.1
TraesCS6D01G055100.1
TraesCS7A01G264800.1
TraesCS7B01G162700.4
TraesCS7D01G265600.3
TraesCSU01G014000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	TraesCS4A01G191300.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS4B01G124000.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS4D01G122000.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS5A01G144000.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS5B01G143100.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS5D01G148000.1	AT3G54220.1	17785527
AT1G03840.1	TraesCS2A01G192600.1	AT4G37650.1	17785527
AT1G03840.1	TraesCS2B01G214600.1	AT4G37650.1	17785527
AT1G03840.1	TraesCS2D01G194800.1	AT4G37650.1	17785527
AT5G44160.1	TraesCS2A01G532900.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS2B01G562400.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS2D01G055700.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS2D01G534700.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS3A01G487500.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS3B01G535100.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS3D01G482600.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS4A01G185900.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS4B01G133000.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS4D01G127800.2	AT1G50420.1	21798944
AT5G44160.1	TraesCS5A01G135000.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS5B01G133800.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS5D01G139500.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS6D01G055100.1	AT1G50420.1	21798944
AT5G44160.1	TraesCSU01G014000.1	AT1G50420.1	21798944
AT5G44160.1	TraesCS4A01G143200.1	AT3G12280.1	22921914
AT5G44160.1	TraesCS4B01G162200.1	AT3G12280.1	22921914
AT5G44160.1	TraesCS4D01G159600.1	AT3G12280.1	22921914
AT5G44160.1	TraesCS7A01G264800.1	AT3G12280.1	22921914
AT5G44160.1	TraesCS7B01G162700.4	AT3G12280.1	22921914
AT5G44160.1	TraesCS7D01G265600.3	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G188400.2	Wheat	nucleus	96.88	93.61
TraesCS2D01G199300.3	Wheat	nucleus	96.51	91.6
HORVU2Hr1G036710.3	Barley	nucleus	88.4	81.68
Os07t0581366-00	Rice	cytosol, nucleus	58.98	74.61
CDY14910	Canola	nucleus	11.47	69.17
Bra036013.1-P	Field mustard	nucleus	12.84	65.19
CDY72283	Canola	nucleus	14.71	62.43
Zm00001d006682_P001	Maize	nucleus	57.73	62.4
EER97442	Sorghum	nucleus	60.1	61.48
Zm00001d021932_P001	Maize	nucleus	60.85	59.88
VIT_12s0028g03030.t01	Wine grape	nucleus	22.69	42.62
TraesCS4B01G262400.1	Wheat	nucleus	26.56	40.34
TraesCS6B01G154000.1	Wheat	nucleus	19.58	38.39
Bra033724.1-P	Field mustard	nucleus	22.07	38.15
CDY22307	Canola	nucleus	22.07	38.15
KRH49655	Soybean	nucleus	17.08	37.85
AT5G44160.1	Thale cress	nucleus	21.95	37.77
CDX94759	Canola	nucleus	21.82	37.72
KRH22332	Soybean	nucleus	22.07	37.34
KRH25657	Soybean	nucleus	21.82	37.16
KRH26995	Soybean	nucleus	22.19	37.08
KRH55868	Soybean	nucleus	21.7	36.71
TraesCS3B01G123600.1	Wheat	nucleus	22.57	36.42
TraesCS3B01G195900.1	Wheat	nucleus	22.07	36.05
CDY18188	Canola	nucleus	21.32	35.7
Bra015271.1-P	Field mustard	nucleus	21.32	35.48
CDX89862	Canola	nucleus	21.2	35.42
Bra032541.1-P	Field mustard	nucleus	21.57	35.31
CDY32514	Canola	nucleus	21.57	35.31
AT1G03840.1	Thale cress	nucleus	22.07	34.98
TraesCS5B01G358600.1	Wheat	nucleus, plastid	23.69	34.8
PGSC0003DMT400024272	Potato	nucleus	21.45	34.75
TraesCS3B01G237700.1	Wheat	nucleus	20.32	34.53
Solyc07g053570.2.1	Tomato	nucleus	21.45	34.26
TraesCS4B01G296200.1	Wheat	nucleus	20.32	33.68
TraesCS3B01G497200.1	Wheat	nucleus	20.95	32.88
TraesCS2B01G306100.1	Wheat	nucleus	19.33	32.09
TraesCS6B01G271000.1	Wheat	nucleus	22.57	31.42
TraesCS4B01G230800.1	Wheat	nucleus, plastid	15.46	30.62
TraesCS2B01G421100.1	Wheat	nucleus	22.69	29.74
TraesCS5B01G232200.1	Wheat	nucleus	15.34	25.0

Protein Annotations

EnsemblPlants:TraesCS2B01G218900.1	EnsemblPlantsGene:TraesCS2B01G218900	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593	PANTHER:PTHR10593:SF29
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15

Description

No Description!

Coordinates

chr2B:-:208623723..208626988

Molecular Weight (calculated)

87081.5 Da

IEP (calculated)

5.299

GRAVY (calculated)

-0.742

Length

802 amino acids

Sequence
(BLAST)

001: MPPNPTEPEQ PEAAATPAPP KKKRNLPGTP DPDAEVIALS PGTLMATNRF VCEVCGKGFQ RDQNLQLHRR GHNLPWRLRQ RGPGAAPPRR RVYVCPEPGC
101: VHHSPARALG DLTGIKKHFC RKHGEKRWAC PRCGKRYAVQ ADLKAHAKTC GTREYRCDCG TLFTRRDSFV THRAFCGALV EETGRVLAVP APPSPRPPDL
201: QEVEENVDKD KEKEEENVDK HKEKEDEEDK GGEDENETSA VAEVDEPQNV EAAMEEPQQQ RIPPSPSPTP TSPTPQEQQP MVAVVPNLDE PVVVVEPIVD
301: IKQEEEDKRD EDVCFQEADK YDGAELEDSN LPDNDTPMPP CFLPSPSDAI GTDGSSTSCG TVSSASNSIA PATTTSTFAG LFASATTSTT PQSRSLRDLI
401: GVDPTFLCLA IGTPSSLFPQ TDASNPGTFA PPPAPHISAT ALLQKAAEAG ASQAGTSFLK EFGLASSSSS TPSRPPQGRF IESSSMQSQQ PQGRFIESSS
501: TQSRLPQDRF IDSSSTQSQL PKDRFIDSIS TQSRLPHDRF IESSSTQSRL PQDRFIESSS TQFRLPQDRY INNSMPSKLS QGRFMDTSLP SQQLLPQGRF
601: FDNSPASNLS QGRFFDNSQP SNPPQGRFFI NSPSSNLPHG RFTDYSSPGR LPQGMYIDGL PQSRLPQGRY MDNSPPAKLP PQGGRFVDSN QQQWHQRSNN
701: HNQLMDMEPG PMVSGSLGLG LAYEGSNPRL PDLMMGQSPL LGPKPATLDF LGLGIGGTMG GSTASGGLPA LMVGGELDMG SAAQPPSPWE EAQRKTNGRT
801: IL

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.