Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G294900.1 | Wheat | nucleus | 98.97 | 98.97 |
| TraesCS4A01G008900.1 | Wheat | nucleus | 98.76 | 98.56 |
| Os02t0518500-00 | Rice | nucleus | 83.88 | 82.52 |
| KXG30322 | Sorghum | nucleus | 78.31 | 79.79 |
| Zm00001d016632_P001 | Maize | nucleus | 82.85 | 78.94 |
| EES05153 | Sorghum | nucleus | 79.75 | 78.62 |
| TraesCS2B01G306100.1 | Wheat | nucleus | 65.7 | 65.84 |
| TraesCS6B01G154000.1 | Wheat | nucleus | 31.82 | 37.65 |
| VIT_09s0054g01820.t01 | Wine grape | nucleus | 30.58 | 37.56 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 36.98 | 36.02 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 35.12 | 34.62 |
| TraesCS3B01G237700.1 | Wheat | nucleus | 32.44 | 33.26 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 34.71 | 31.82 |
| TraesCS3B01G497200.1 | Wheat | nucleus | 33.26 | 31.51 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 32.85 | 29.12 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 36.78 | 29.09 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 34.3 | 28.82 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 22.11 | 26.42 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 22.93 | 22.56 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 33.68 | 20.32 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G296200.1 | EnsemblPlantsGene:TraesCS4B01G296200 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF48 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr4B:-:581535949..581538586
Molecular Weight (calculated)
53280.6 Da
IEP (calculated)
7.323
GRAVY (calculated)
-0.681
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHTSEEESL SSFQQQPKLE VGAAGPSRGD PAAMPVVKKR RGHPGNPDPD VEVVALSPKT LVATNRYICE VCHKGFQRDQ NLQLHRRGHN LPWKLKQRSS
101: TDAKKKVYVC PEVTCPHHDA TRALGDLTGI KKHFSRKHGE KKWKCERCSK KYAVQSDWKA HTKICGTKEY RCDCGTIFSR KDSFITHRAF CDVLAEDNSR
201: VNHSLATMVG SLHGQHDMYS HGVPSPTDMV ANMSSNDHNS DMHLRSLSPY ALITRNTALF SNQIPPKDPG FPLDGSASGY PYMSMNSPYM SATALLQKAA
301: EMGAKTSQDP ISPLLLKGFA NNFTSARDHM GISSGSQGDS MGNSAANSVC MKAAEDESMN GHNNILINSA WTSGMMTPTT VPLIGLMNNP FSMRQEKESP
401: QIMPDIQTQH NRQENISEVG DAGLTQDFLG LGGNGNLDIS SGTYNTDVTA LSYSDDQQKN QEQMYSYHES SLDSTALDKP MWDS
101: TDAKKKVYVC PEVTCPHHDA TRALGDLTGI KKHFSRKHGE KKWKCERCSK KYAVQSDWKA HTKICGTKEY RCDCGTIFSR KDSFITHRAF CDVLAEDNSR
201: VNHSLATMVG SLHGQHDMYS HGVPSPTDMV ANMSSNDHNS DMHLRSLSPY ALITRNTALF SNQIPPKDPG FPLDGSASGY PYMSMNSPYM SATALLQKAA
301: EMGAKTSQDP ISPLLLKGFA NNFTSARDHM GISSGSQGDS MGNSAANSVC MKAAEDESMN GHNNILINSA WTSGMMTPTT VPLIGLMNNP FSMRQEKESP
401: QIMPDIQTQH NRQENISEVG DAGLTQDFLG LGGNGNLDIS SGTYNTDVTA LSYSDDQQKN QEQMYSYHES SLDSTALDKP MWDS
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.