Factsheet for TraesCS5B01G358600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G356100.1	Wheat	nucleus, plastid	96.89	97.06
TraesCS5D01G364900.1	Wheat	nucleus, plastid	96.34	96.16
CDY04118	Canola	nucleus	19.41	89.08
CDY09390	Canola	nucleus	19.05	87.39
Os09t0555700-02	Rice	nucleus	71.43	72.9
CDY53540	Canola	nucleus	23.44	65.98
CDY04117	Canola	nucleus	25.46	64.95
KRG89168	Soybean	nucleus, plastid	35.53	55.75
GSMUA_Achr3P13990_001	Banana	nucleus	38.28	49.06
GSMUA_Achr9P23870_001	Banana	nucleus	38.28	48.16
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	41.76	46.53
GSMUA_Achr1P17940_001	Banana	nucleus	39.74	46.47
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	41.03	45.81
VIT_01s0010g02100.t01	Wine grape	nucleus	47.25	45.1
KRH49489	Soybean	nucleus, plastid	43.04	44.09
KRH49485	Soybean	nucleus	43.04	43.28
KRG90705	Soybean	nucleus	44.51	42.86
KRG89167	Soybean	nucleus, plastid	42.86	42.62
KRH36039	Soybean	nucleus	44.51	42.56
KRH34792	Soybean	nucleus	42.86	42.16
KRG91985	Soybean	nucleus	42.86	41.79
TraesCS2B01G421100.1	Wheat	nucleus	46.15	41.18
CDY59418	Canola	nucleus	30.95	40.92
GSMUA_Achr4P05240_001	Banana	nucleus	37.36	40.8
TraesCS6B01G271000.1	Wheat	nucleus	43.04	40.8
CDY45271	Canola	nucleus	30.95	40.62
TraesCS3B01G195900.1	Wheat	nucleus	36.26	40.33
TraesCS6B01G154000.1	Wheat	nucleus	30.04	40.1
TraesCS3B01G123600.1	Wheat	nucleus	36.45	40.04
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	47.99	39.64
CDY17440	Canola	nucleus	34.62	39.54
PGSC0003DMT400075837	Potato	nucleus	37.18	39.19
CDY45270	Canola	nucleus	32.23	39.11
Bra026204.1-P	Field mustard	nucleus, plastid	32.23	39.11
CDY03081	Canola	nucleus	37.18	38.74
Solyc04g008500.2.1	Tomato	nucleus	36.63	38.68
CDY17615	Canola	nucleus	37.0	38.33
CDY15814	Canola	nucleus	33.15	38.27
AT2G02080.3	Thale cress	nucleus, plastid	36.08	38.18
AT1G14580.3	Thale cress	nucleus	33.33	37.84
CDY17614	Canola	nucleus, plastid	35.53	37.82
CDX81653	Canola	nucleus	32.23	37.69
Bra026819.1-P	Field mustard	nucleus	32.23	37.69
Bra024833.1-P	Field mustard	plastid	35.35	37.62
CDY03080	Canola	nucleus, plastid	35.16	37.21
Bra026616.1-P	Field mustard	nucleus	34.62	36.99
CDY09391	Canola	nucleus	38.28	36.86
Bra026203.1-P	Field mustard	nucleus, plastid	31.14	36.64
Bra024834.1-P	Field mustard	nucleus, plastid	37.0	36.59
CDY15811	Canola	nucleus	37.91	36.44
Bra023223.1-P	Field mustard	plastid	31.87	36.25
TraesCS3B01G237700.1	Wheat	nucleus	30.77	35.59
Bra026617.1-P	Field mustard	nucleus	38.28	35.42
TraesCS3B01G497200.1	Wheat	nucleus	32.97	35.23
Bra040974.1-P	Field mustard	nucleus, plastid	37.73	35.21
TraesCS4B01G262400.1	Wheat	nucleus	33.7	34.85
AT2G02070.2	Thale cress	nucleus	38.28	34.72
CDY12268	Canola	nucleus	27.84	34.08
CDY68983	Canola	nucleus	24.18	33.76
TraesCS2B01G306100.1	Wheat	nucleus	29.67	33.54
TraesCS4B01G296200.1	Wheat	nucleus	29.12	32.85
TraesCS4B01G230800.1	Wheat	nucleus, plastid	21.98	29.63
TraesCS5B01G232200.1	Wheat	nucleus	22.34	24.8
TraesCS2B01G218900.1	Wheat	nucleus	34.8	23.69

Protein Annotations

EnsemblPlants:TraesCS5B01G358600.1	EnsemblPlantsGene:TraesCS5B01G358600	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF66	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr5B:+:538542172..538548418

Molecular Weight (calculated)

55851.4 Da

IEP (calculated)

9.426

GRAVY (calculated)

-0.497

Length

546 amino acids

Sequence
(BLAST)

001: MAAASSAPFF GLSDAQMQPL MPAQQPPAPA AAAPAPKKKR NQPGNPNPDA EVIALSPRSL MATNRFVCEV CGKGFQREQN LQLHRRGHNL PWKLKQKNPK
101: ETRRRVYLCP EPTCVHHDPA RALGDLTGIK KHYCRKHGEK KWKCDKCAKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL
201: PPIGAGMYGG PGNMALSNLS VLAPQMAGGF PDQSGHHSSA SAIDVLNLGG GGGNAGQFEH LMPSSSGSSM FRSQAANSSP FYMGGGAAQD FAEDDVHRSH
301: GNQGSLLQGK SPAAFDGLMQ LPDQHQGSGG GNGNNNLLNL GFFSGNGNGG GQDSRLVFQN QYNGSAGNGS SSNGNGENGG MVASGSILGG GGGGFPSLYS
401: SSEAGGGLPQ MSATALLQKA AQMGATTSSH NAGAGGAGLL RGPGMRGGSG EGGSSAAAAA ASERQSFHDL IMNSLGSGSG ASATTGGRAG AFGSGGGFPV
501: DDGKLSTRDF LGVGPGGVVQ AGMGPPRRHS GGAGLHMGSL DPAELK

Best Arabidopsis Sequence Match ( AT2G02080.3 )
(BLAST)

001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG

Arabidopsis Description

IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.