Factsheet for Bra026204.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45270	Canola	nucleus	98.89	98.89
Bra026203.1-P	Field mustard	nucleus, plastid	86.0	83.41
Bra036013.1-P	Field mustard	nucleus	21.33	60.76
KRG89168	Soybean	nucleus, plastid	34.89	45.11
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	34.89	43.13
Bra026819.1-P	Field mustard	nucleus	39.33	37.9
GSMUA_Achr3P13990_001	Banana	nucleus	35.33	37.32
GSMUA_Achr9P23870_001	Banana	nucleus	35.78	37.1
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	32.67	36.93
GSMUA_Achr1P07110_001	Banana	nucleus	39.78	36.83
Bra023223.1-P	Field mustard	plastid	38.89	36.46
Bra036098.1-P	Field mustard	nucleus, plastid	35.11	36.24
GSMUA_Achr1P17940_001	Banana	nucleus	37.56	36.19
AT1G14580.3	Thale cress	nucleus	38.44	35.97
GSMUA_Achr10P...	Banana	nucleus	37.78	35.49
PGSC0003DMT400075837	Potato	nucleus	40.22	34.94
GSMUA_Achr4P04310_001	Banana	nucleus	36.67	34.88
Bra033840.1-P	Field mustard	nucleus	34.89	34.66
KRH49485	Soybean	nucleus	41.78	34.62
KRG91985	Soybean	nucleus	42.67	34.29
KRG89167	Soybean	nucleus, plastid	41.78	34.24
Bra018535.1-P	Field mustard	plastid	30.67	34.16
KRH34792	Soybean	nucleus	42.0	34.05
Solyc04g008500.2.1	Tomato	nucleus	39.11	34.04
KRG90705	Soybean	nucleus	42.89	34.04
KRH49489	Soybean	nucleus, plastid	40.22	33.96
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	36.89	33.88
Bra030886.1-P	Field mustard	nucleus	32.89	33.87
Bra026616.1-P	Field mustard	nucleus	38.44	33.86
KRH36039	Soybean	nucleus	42.89	33.8
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	36.67	33.74
VIT_01s0010g02100.t01	Wine grape	nucleus	42.67	33.57
Bra024833.1-P	Field mustard	plastid	38.0	33.33
Bra033724.1-P	Field mustard	nucleus	34.22	33.19
Zm00001d021403_P001	Maize	nucleus	35.56	33.06
OQU89911	Sorghum	nucleus, plastid	39.11	33.02
Bra037151.1-P	Field mustard	nucleus	35.56	32.52
GSMUA_Achr11P...	Banana	nucleus	38.44	32.46
TraesCS5B01G358600.1	Wheat	nucleus, plastid	39.11	32.23
Os09t0555700-02	Rice	nucleus	38.22	32.15
TraesCS5A01G356100.1	Wheat	nucleus, plastid	38.89	32.11
GSMUA_Achr4P05240_001	Banana	nucleus	35.56	32.0
TraesCS5D01G364900.1	Wheat	nucleus, plastid	38.67	31.81
Bra015271.1-P	Field mustard	nucleus	33.78	31.54
GSMUA_Achr11P...	Banana	nucleus	35.33	31.12
GSMUA_Achr1P02080_001	Banana	nucleus	37.78	31.08
KXG25416	Sorghum	nucleus	38.0	30.92
Os08t0554400-02	Rice	nucleus	37.56	30.84
Bra032541.1-P	Field mustard	nucleus	33.33	30.61
Bra005741.1-P	Field mustard	nucleus	34.22	30.56
Bra024834.1-P	Field mustard	nucleus, plastid	37.11	30.25
Bra027394.1-P	Field mustard	nucleus	33.78	30.1
Bra021510.1-P	Field mustard	nucleus	34.0	30.0
EES11271	Sorghum	nucleus	39.78	29.88
Zm00001d026113_P006	Maize	nucleus	39.33	29.55
Bra009549.1-P	Field mustard	nucleus	33.78	29.46
GSMUA_Achr11P...	Banana	nucleus	36.89	29.33
Zm00001d017560_P001	Maize	nucleus	37.78	29.21
TraesCS6B01G271000.1	Wheat	nucleus	37.33	29.17
TraesCS6D01G235800.1	Wheat	nucleus	37.33	29.07
TraesCS6A01G254500.1	Wheat	nucleus	37.33	29.07
KXG31026	Sorghum	nucleus	38.22	28.91
Bra026617.1-P	Field mustard	nucleus	37.78	28.81
Bra040974.1-P	Field mustard	nucleus, plastid	37.33	28.72
TraesCS2B01G421100.1	Wheat	nucleus	38.89	28.59
KXG36163	Sorghum	nucleus	36.89	28.52
Os02t0672100-01	Rice	nucleus	38.44	28.13
Bra001523.1-P	Field mustard	nucleus	32.0	28.12
Zm00001d002654_P003	Maize	nucleus	39.56	28.12
Zm00001d006319_P001	Maize	nucleus	34.67	27.91
Os04t0566400-02	Rice	nucleus	38.0	27.9
Zm00001d031992_P001	Maize	nucleus	37.11	27.6
TraesCS2D01G400300.2	Wheat	nucleus	38.89	26.43
TraesCS2A01G403200.2	Wheat	nucleus	38.67	26.24
Bra010981.1-P	Field mustard	nucleus	21.33	25.4
Bra024771.1-P	Field mustard	nucleus	21.11	24.8
Bra017432.1-P	Field mustard	nucleus	23.56	24.09
Bra026624.1-P	Field mustard	nucleus	23.11	23.74
Bra024841.1-P	Field mustard	nucleus	23.33	23.65
Bra004050.1-P	Field mustard	nucleus	21.33	23.24
Bra004283.1-P	Field mustard	nucleus	21.11	23.06
Bra038293.1-P	Field mustard	nucleus	34.22	17.38

Protein Annotations

EnsemblPlants:Bra026204.1	EnsemblPlants:Bra026204.1-P	EnsemblPlantsGene:Bra026204	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF66
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000253EF3C
UniProt:M4EBP5	MapMan:15.5.15	:	:	:	:

Description

AT1G14580 (E=3e-140) | zinc finger (C2H2 type) family protein

Coordinates

chrA06:+:5588767..5590666

Molecular Weight (calculated)

49292.0 Da

IEP (calculated)

8.728

GRAVY (calculated)

-0.861

Length

450 amino acids

Sequence
(BLAST)

001: MSSSYNNTIS SSSTQSFPLL AIGANNFNRE ETAMTMNQRP NSVSPPPRRL RNKPGNPSPD AEVIALSPEE IMATNRFQCE VCQKGFQREQ NLQLHRRGHN
101: LPFNLKQKSD EQVRRKVYVC PEPTCVYHDP SRALGDLTGI KKHYYRKHGD EKKFKCEKCN KFYAVESDCK AHFKNCGTKE YRCVCGTKFS RSDSYETHRA
201: FCEALARESA GNPNLSFTEM LAAAGGSDGS SRHGLYGGAS SGLSHNHFGD NSNSGFAPPA AGFNLNRSSS PKFEDFFPQS TNPNHGPTTN FPMQYPSNQG
301: LLARNDQNLM NQHGLINSNN NNNNLFNPGY FQANTQNLSD QTGGPPLFHH ADNNVPSALL RGSSMAANNF GGSGNANSQG QMNSLAATSG HQGRPGSSIF
401: DHRLGNNLSI GGPDRRTLDF LGVNGRGGRN EPPLDLDMKF SDPNNPFGNV

Best Arabidopsis Sequence Match ( AT1G14580.1 )
(BLAST)

001: MSSSYNTIAL SSTPTFLLSS AAAGPGPNNF NRQEAAMTMV QQQPTSSVAP PPKKRRNQPG NPNPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH
101: RRGHNLPWKL KQKSNKEVRR KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTKEYRCDCG TIFSRRDSYI
201: THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ
301: GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ
401: QGRSPSLFDL HFANNLSMGG SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA

Arabidopsis Description

C2H2-like zinc finger protein [Source:TAIR;Acc:AT1G14580]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.