Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075837 | Potato | nucleus | 92.65 | 92.47 |
| CDY09390 | Canola | nucleus | 20.7 | 89.92 |
| CDY04118 | Canola | nucleus | 20.7 | 89.92 |
| CDY53540 | Canola | nucleus | 25.53 | 68.04 |
| CDY04117 | Canola | nucleus | 26.31 | 63.55 |
| KRG89168 | Soybean | nucleus, plastid | 36.94 | 54.89 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 35.98 | 51.1 |
| GSMUA_Achr5P11770_001 | Banana | nucleus, plastid | 35.01 | 45.48 |
| GSMUA_Achr4P11810_001 | Banana | mitochondrion, nucleus | 41.59 | 43.88 |
| GSMUA_Achr9P23870_001 | Banana | nucleus | 36.56 | 43.55 |
| GSMUA_Achr3P13990_001 | Banana | nucleus | 35.59 | 43.19 |
| KRH49489 | Soybean | nucleus, plastid | 44.49 | 43.15 |
| KRH49485 | Soybean | nucleus | 44.87 | 42.73 |
| KRH36039 | Soybean | nucleus | 46.81 | 42.38 |
| KRG90705 | Soybean | nucleus | 46.42 | 42.33 |
| GSMUA_Achr4P04310_001 | Banana | nucleus | 38.68 | 42.28 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 39.85 | 42.13 |
| KRG89167 | Soybean | nucleus, plastid | 44.1 | 41.53 |
| CDY45271 | Canola | nucleus | 33.27 | 41.35 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 45.65 | 41.26 |
| KRG91985 | Soybean | nucleus | 44.68 | 41.25 |
| GSMUA_Achr1P07110_001 | Banana | nucleus | 38.68 | 41.15 |
| GSMUA_Achr1P17940_001 | Banana | nucleus | 36.94 | 40.9 |
| KRH34792 | Soybean | nucleus | 43.71 | 40.72 |
| GSMUA_Achr10P... | Banana | nucleus | 37.72 | 40.71 |
| Zm00001d021403_P001 | Maize | nucleus | 37.72 | 40.29 |
| Solyc01g099340.2.1 | Tomato | nucleus | 32.69 | 39.86 |
| CDY45270 | Canola | nucleus | 34.24 | 39.33 |
| CDY59418 | Canola | nucleus | 31.33 | 39.23 |
| Solyc11g069240.1.1 | Tomato | nucleus | 34.04 | 39.2 |
| Bra026204.1-P | Field mustard | nucleus, plastid | 34.04 | 39.11 |
| Os09t0555700-02 | Rice | nucleus | 40.43 | 39.07 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 34.62 | 39.0 |
| GSMUA_Achr1P02080_001 | Banana | nucleus | 41.01 | 38.76 |
| KXG25416 | Sorghum | nucleus | 41.39 | 38.7 |
| Os08t0554400-02 | Rice | nucleus | 41.01 | 38.69 |
| OQU89911 | Sorghum | nucleus, plastid | 39.65 | 38.46 |
| Solyc10g084180.1.1 | Tomato | nucleus | 36.56 | 38.34 |
| CDY03081 | Canola | nucleus | 38.68 | 38.17 |
| CDY17615 | Canola | nucleus | 38.68 | 37.95 |
| Bra026203.1-P | Field mustard | nucleus, plastid | 33.66 | 37.5 |
| Solyc08g063040.2.1 | Tomato | nucleus | 33.85 | 37.47 |
| GSMUA_Achr11P... | Banana | nucleus | 38.49 | 37.34 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 39.27 | 37.11 |
| CDY17440 | Canola | nucleus | 34.24 | 37.03 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 36.94 | 37.02 |
| TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 38.88 | 36.88 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 38.68 | 36.63 |
| CDX81653 | Canola | nucleus | 33.08 | 36.62 |
| Bra026819.1-P | Field mustard | nucleus | 33.08 | 36.62 |
| GSMUA_Achr4P05240_001 | Banana | nucleus | 35.4 | 36.6 |
| CDY15814 | Canola | nucleus | 33.46 | 36.58 |
| Bra024834.1-P | Field mustard | nucleus, plastid | 38.68 | 36.23 |
| AT1G14580.3 | Thale cress | nucleus | 33.66 | 36.17 |
| Solyc09g065670.2.1 | Tomato | nucleus | 32.88 | 36.17 |
| CDY17614 | Canola | nucleus, plastid | 35.78 | 36.06 |
| Bra026616.1-P | Field mustard | nucleus | 35.59 | 36.01 |
| CDY09391 | Canola | nucleus | 39.46 | 35.98 |
| CDY15811 | Canola | nucleus | 39.46 | 35.92 |
| Bra024833.1-P | Field mustard | plastid | 35.59 | 35.87 |
| GSMUA_Achr11P... | Banana | nucleus | 35.4 | 35.81 |
| CDY03080 | Canola | nucleus, plastid | 35.59 | 35.66 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 36.36 | 35.61 |
| Solyc04g080130.2.1 | Tomato | nucleus | 34.43 | 35.53 |
| Solyc07g053570.2.1 | Tomato | nucleus | 34.04 | 35.06 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 35.2 | 35.0 |
| Solyc06g062670.2.1 | Tomato | nucleus | 34.04 | 34.99 |
| GSMUA_Achr11P... | Banana | nucleus | 38.1 | 34.81 |
| TraesCS6A01G254500.1 | Wheat | nucleus | 38.88 | 34.78 |
| Bra026617.1-P | Field mustard | nucleus | 39.65 | 34.75 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 38.68 | 34.72 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 38.68 | 34.6 |
| Zm00001d031992_P001 | Maize | nucleus | 40.43 | 34.55 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 40.62 | 34.31 |
| EES11271 | Sorghum | nucleus | 39.65 | 34.22 |
| Bra040974.1-P | Field mustard | nucleus, plastid | 38.49 | 34.02 |
| Solyc03g121660.2.1 | Tomato | nucleus | 35.59 | 33.95 |
| VIT_01s0010g02090.t01 | Wine grape | extracellular, vacuole | 42.94 | 33.59 |
| Zm00001d017560_P001 | Maize | nucleus | 37.72 | 33.51 |
| Os04t0566400-02 | Rice | nucleus | 39.65 | 33.44 |
| Zm00001d026113_P006 | Maize | nucleus | 38.68 | 33.39 |
| Bra023223.1-P | Field mustard | plastid | 30.95 | 33.33 |
| AT2G02070.2 | Thale cress | nucleus | 38.68 | 33.22 |
| KXG31026 | Sorghum | nucleus | 38.1 | 33.11 |
| KXG36163 | Sorghum | nucleus | 37.14 | 32.99 |
| Zm00001d006319_P001 | Maize | nucleus | 35.59 | 32.92 |
| Os02t0672100-01 | Rice | nucleus | 39.07 | 32.85 |
| Zm00001d002654_P003 | Maize | nucleus | 39.85 | 32.54 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 40.62 | 31.72 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 40.62 | 31.67 |
| CDY12268 | Canola | nucleus | 27.27 | 31.61 |
| Solyc01g005060.2.1 | Tomato | nucleus | 20.5 | 31.27 |
| CDY68983 | Canola | nucleus | 22.82 | 30.18 |
| Solyc06g072360.2.1 | Tomato | nucleus | 22.24 | 29.34 |
| Solyc05g054030.2.1 | Tomato | nucleus | 20.31 | 27.56 |
| Solyc02g062940.2.1 | Tomato | nucleus | 33.08 | 26.07 |
| Solyc03g098070.2.1 | Tomato | nucleus | 17.41 | 24.73 |
Protein Annotations
| EnsemblPlants:Solyc04g008500.2.1 | EnsemblPlantsGene:Solyc04g008500.2 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF66 | PFAM:PF00096 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000276714A |
| UniProt:K4BP06 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:2123723..2129872
Molecular Weight (calculated)
57522.8 Da
IEP (calculated)
9.230
GRAVY (calculated)
-0.855
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MREEELSQNQ QENLLQAQAP SKKRRNQPGT PSPDAEVIAL SPNTLMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNTKEVAKR KVYLCPEPTC
101: VHHEPSRALG DLTGIKKHYF RKHGEKKFKC EKCSKKYAVQ SDWKAHTKTC GTREYRCDCG TLFSRRDSFI THRAFCDALV QENARNILSP NSLMNTLGMN
201: NNQYLYGSSS NINLGTFSKL GNNNNITKTT TTTTTTTSGV QFDHHHHDNN LIGSSTTTTT TTNNPFFLQD TNQDHYNANN NNIKPLMVHG LMQLPNLDHN
301: NNNSSSSTTM FNLNFFQNNL STNSGILGDH HHHHHRHDNN SNISCSIPSL YGVQVLESSN TTFSSGPIMS ATALLQKAAQ MGSSSTSNIS ATASLFKAFG
401: SNTSGSSSSG TKSDHQAFNF GSDITDSGII NAYGGGSHEG YNTTTKLNFE QNQGPPQKKQ LTRDFLGVGE IVRSMNGRFS TQREQQQQNN GLNNMMSSLL
501: DPERNQIQQS FGSATND
101: VHHEPSRALG DLTGIKKHYF RKHGEKKFKC EKCSKKYAVQ SDWKAHTKTC GTREYRCDCG TLFSRRDSFI THRAFCDALV QENARNILSP NSLMNTLGMN
201: NNQYLYGSSS NINLGTFSKL GNNNNITKTT TTTTTTTSGV QFDHHHHDNN LIGSSTTTTT TTNNPFFLQD TNQDHYNANN NNIKPLMVHG LMQLPNLDHN
301: NNNSSSSTTM FNLNFFQNNL STNSGILGDH HHHHHRHDNN SNISCSIPSL YGVQVLESSN TTFSSGPIMS ATALLQKAAQ MGSSSTSNIS ATASLFKAFG
401: SNTSGSSSSG TKSDHQAFNF GSDITDSGII NAYGGGSHEG YNTTTKLNFE QNQGPPQKKQ LTRDFLGVGE IVRSMNGRFS TQREQQQQNN GLNNMMSSLL
501: DPERNQIQQS FGSATND
001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
Arabidopsis Description
IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.