Factsheet for Solyc10g084180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g092370.1.1
Solyc06g075250.2.1
Solyc07g053570.2.1
Solyc09g007550.2.1
Solyc10g074680.1.1
Solyc10g084180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03150.1	Solyc07g053570.2.1	AT1G03840.1	17785527
AT5G03150.1	Solyc10g074680.1.1	AT3G54220.1	17785527
AT5G03150.1	Solyc02g092370.1.1	AT4G37650.1	17785527
AT5G03150.1	Solyc06g075250.2.1	AT5G03150.1	17785527
AT5G03150.1	Solyc09g007550.2.1	AT5G03150.1	17785527
AT5G03150.1	Solyc10g084180.1.1	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027159	Potato	nucleus	95.74	95.94
Solyc11g069240.1.1	Tomato	nucleus	46.45	51.0
Solyc06g075250.2.1	Tomato	nucleus, plastid	51.93	48.48
Solyc09g007550.2.1	Tomato	nucleus, plastid	41.18	44.23
VIT_08s0040g02100.t01	Wine grape	nucleus	42.8	42.89
KRH67672	Soybean	nucleus	44.02	42.22
KRG95964	Soybean	nucleus	43.61	42.16
GSMUA_Achr7P22720_001	Banana	mitochondrion	23.73	41.64
Solyc01g099340.2.1	Tomato	nucleus	35.5	41.27
KRH19850	Soybean	nucleus	42.6	40.0
Solyc08g063040.2.1	Tomato	nucleus	37.53	39.61
KRH32442	Soybean	nucleus	42.39	39.29
AT5G03150.1	Thale cress	nucleus	39.55	38.77
CDY44344	Canola	nucleus	39.15	38.6
CDY10404	Canola	nucleus	39.55	38.46
CDY11241	Canola	nucleus	38.95	38.17
Bra005741.1-P	Field mustard	nucleus	38.74	37.9
CDX80854	Canola	nucleus	38.54	37.62
Bra009549.1-P	Field mustard	nucleus	39.15	37.4
CDX70328	Canola	nucleus	38.95	37.35
Solyc04g008500.2.1	Tomato	nucleus	38.34	36.56
Solyc09g065670.2.1	Tomato	nucleus	34.48	36.17
Solyc06g062670.2.1	Tomato	nucleus	36.71	35.98
Solyc09g074780.2.1	Tomato	nucleus, plastid	37.73	35.77
Solyc04g080130.2.1	Tomato	nucleus	35.9	35.33
Solyc03g121660.2.1	Tomato	nucleus	38.34	34.87
Solyc07g053570.2.1	Tomato	nucleus	35.29	34.66
Solyc01g005060.2.1	Tomato	nucleus	22.52	32.74
Solyc06g072360.2.1	Tomato	nucleus	25.36	31.89
Solyc05g054030.2.1	Tomato	nucleus	22.52	29.13
Solyc03g098070.2.1	Tomato	nucleus	19.68	26.65
Solyc02g062940.2.1	Tomato	nucleus	35.29	26.52

Protein Annotations

EnsemblPlants:Solyc10g084180.1.1	EnsemblPlantsGene:Solyc10g084180.1	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593
PANTHER:PTHR10593:SF99	PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000276A258	UniProt:K4D3K4	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr10:-:63834729..63836715

Molecular Weight (calculated)

54592.0 Da

IEP (calculated)

9.320

GRAVY (calculated)

-0.686

Length

493 amino acids

Sequence
(BLAST)

001: MMSGDVFSFP SSVKAVLPHH HQELQTANPN PKPNTSSKKR RNLPGTPDPD AEVIALSPKS LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK
101: LEQVKKKVYI CPEKTCIHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS RKDSFITHRA FCDALAEESS
201: RITSVGATNL INFPNTATLL NQQQANLHGG FAGCRPDFGS YTTGNNNSLH QQQQQKPRLS LWLDQQAANH NNPLQISSSS NLFDSSSTGG FQEMIQMQSQ
301: NVFGSSNSTS ANFSIAEAYN SLYSDSQNSQ LTKQNSTTPM SATALLQKAA QMGSTKSNQS TFFSNNFSKL NSSSSSSPNT PTFTSLQSCE TTDQIFAKKS
401: EDYTTSLLQS NNGLFGCPNF TSSGINKSIN LDEAIMQTVG MHNTQAVSMN GMDNCLTRDF LGIKHEGNCQ FLPQEIVKFA SMNSSAMGLS HLQ

Best Arabidopsis Sequence Match ( AT5G03150.1 )
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG

Arabidopsis Description

JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.