Factsheet for Bra005741.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005741.1-P
Bra007056.1-P
Bra009549.1-P
Bra010606.1-P
Bra011777.1-P
Bra015271.1-P
Bra017842.1-P
Bra032541.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03150.1	Bra015271.1-P	AT1G03840.1	17785527
AT5G03150.1	Bra032541.1-P	AT1G03840.1	17785527
AT5G03150.1	Bra007056.1-P	AT3G54220.1	17785527
AT5G03150.1	Bra010606.1-P	AT4G37650.1	17785527
AT5G03150.1	Bra011777.1-P	AT4G37650.1	17785527
AT5G03150.1	Bra017842.1-P	AT4G37650.1	17785527
AT5G03150.1	Bra005741.1-P	AT5G03150.1	17785527
AT5G03150.1	Bra009549.1-P	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11241	Canola	nucleus	99.6	99.8
Bra009549.1-P	Field mustard	nucleus	91.87	89.73
AT5G03150.1	Thale cress	nucleus	89.09	89.26
Bra036013.1-P	Field mustard	nucleus	20.63	65.82
VIT_08s0040g02100.t01	Wine grape	nucleus	52.78	54.06
KRH67672	Soybean	nucleus	52.18	51.17
KRG95964	Soybean	nucleus	51.19	50.59
PGSC0003DMT400004390	Potato	nucleus	42.86	47.37
Solyc09g007550.2.1	Tomato	nucleus, plastid	42.66	46.84
Bra030886.1-P	Field mustard	nucleus	37.7	43.48
Bra036098.1-P	Field mustard	nucleus, plastid	35.91	41.51
Bra018535.1-P	Field mustard	plastid	32.94	41.09
GSMUA_Achr7P22720_001	Banana	mitochondrion	22.62	40.57
Bra015271.1-P	Field mustard	nucleus	38.49	40.25
Bra033724.1-P	Field mustard	nucleus	36.31	39.44
Bra032541.1-P	Field mustard	nucleus	37.9	38.98
Solyc10g084180.1.1	Tomato	nucleus	37.9	38.74
PGSC0003DMT400027159	Potato	nucleus	37.7	38.62
Bra033840.1-P	Field mustard	nucleus	34.52	38.41
Bra026819.1-P	Field mustard	nucleus	35.32	38.12
Bra027394.1-P	Field mustard	nucleus	37.5	37.43
Bra026616.1-P	Field mustard	nucleus	37.9	37.38
PGSC0003DMT400008694	Potato	nucleus, plastid	39.09	37.31
Bra024833.1-P	Field mustard	plastid	37.7	37.04
Bra037151.1-P	Field mustard	nucleus	36.11	36.99
Solyc06g075250.2.1	Tomato	nucleus, plastid	38.69	36.93
Bra021510.1-P	Field mustard	nucleus	37.3	36.86
Bra001523.1-P	Field mustard	nucleus	36.11	35.55
Bra024834.1-P	Field mustard	nucleus, plastid	38.1	34.78
Bra026204.1-P	Field mustard	nucleus, plastid	30.56	34.22
Bra026617.1-P	Field mustard	nucleus	38.49	32.88
Bra040974.1-P	Field mustard	nucleus, plastid	37.9	32.65
Bra026203.1-P	Field mustard	nucleus, plastid	29.96	32.54
Bra010981.1-P	Field mustard	nucleus	21.83	29.1
Bra023223.1-P	Field mustard	plastid	26.79	28.12
Bra024771.1-P	Field mustard	nucleus	21.23	27.94
Bra026624.1-P	Field mustard	nucleus	22.62	26.03
Bra004283.1-P	Field mustard	nucleus	21.03	25.73
Bra004050.1-P	Field mustard	nucleus	21.03	25.67
Bra017432.1-P	Field mustard	nucleus	22.22	25.45
Bra024841.1-P	Field mustard	nucleus	22.42	25.45
Bra038293.1-P	Field mustard	nucleus	34.72	19.75

Protein Annotations

EnsemblPlants:Bra005741.1	EnsemblPlants:Bra005741.1-P	EnsemblPlantsGene:Bra005741	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:JKD-like	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593
PANTHER:PTHR10593:SF42	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000253FB11	UniProt:M4CNF3	MapMan:15.5.15	:	:	:

Description

AT5G03150 (E=1e-188) JKD | JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding

Coordinates

chrA03:-:388727..391312

Molecular Weight (calculated)

55365.7 Da

IEP (calculated)

9.778

GRAVY (calculated)

-0.731

Length

504 amino acids

Sequence
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QEQHIHHLQQ HIPELNPNSN SNPSAKPNSS SAKKKRNQPG NPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSNKEVIK KKVYICPIKT CVHHDSSRAL GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMNSL SNNPAISTTT SLNFANDSHV INNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSEMHT QGSSEMVQMA STGNHHLFPL
301: SSSSFLSDFS DHHYNQQFEI PTTSTNPNLT LSSSSTSQQT SASLPSLHQQ HQTLKDSSFS PLFSSSSDKK QNKPLSPMSA TALLQKAAQM GSTRSNSTTV
401: PSLFAGPTMA SSSSAASPPR SSSPMTIQQQ LNNFNHNLAP PTSGVTTSSV DNNNPFQSNR SGLNPAQQMG LTRDFLGVSN ENHPHQTGRH PFLPQELARF
501: APLG

Best Arabidopsis Sequence Match ( AT5G03150.1 )
(BLAST)

001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG

Arabidopsis Description

JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.