Factsheet for Bra017842.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001446.1-P
Bra005741.1-P
Bra007056.1-P
Bra009549.1-P
Bra015271.1-P
Bra025456.1-P
Bra032541.1-P
Bra034764.1-P
Bra038707.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	Bra015271.1-P	AT1G03840.1	17785527
AT4G37650.1	Bra032541.1-P	AT1G03840.1	17785527
AT4G37650.1	Bra001446.1-P	AT3G12280.1	22921914
AT4G37650.1	Bra034764.1-P	AT3G12280.1	22921914
AT4G37650.1	Bra038707.1-P	AT3G12280.1	22921914
AT4G37650.1	Bra007056.1-P	AT3G54220.1	17446396
AT4G37650.1	Bra007056.1-P	AT3G54220.1	17785527
AT4G37650.1	Bra007056.1-P	AT3G54220.1	18500650
AT4G37650.1	Bra007056.1-P	AT3G54220.1	22921914
AT4G37650.1	Bra005741.1-P	AT5G03150.1	17785527
AT4G37650.1	Bra009549.1-P	AT5G03150.1	17785527
AT4G37650.1	Bra025456.1-P	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72645	Canola	cytosol, plastid	99.06	99.06
Bra011777.1-P	Field mustard	cytosol, plastid	90.41	90.24
AT4G37650.1	Thale cress	cytosol, plastid	89.85	90.02
Bra010606.1-P	Field mustard	nucleus	70.49	80.13
KRH77129	Soybean	plastid	55.26	61.76
KRH28353	Soybean	plastid	55.83	61.62
PGSC0003DMT400055239	Potato	nucleus	51.5	60.22
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	55.08	59.31
KRH04424	Soybean	plastid	55.64	58.85
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	56.02	58.78
TraesCS2D01G194800.1	Wheat	cytosol, plastid	40.79	56.81
KRH58109	Soybean	cytosol, plastid	52.63	56.11
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.25	49.25
GSMUA_Achr8P30950_001	Banana	mitochondrion	47.18	47.36
GSMUA_Achr4P16460_001	Banana	nucleus	45.68	45.76
OQU90176	Sorghum	nucleus, plastid	49.44	43.98
Zm00001d006721_P001	Maize	nucleus	47.93	43.52
Os07t0586900-01	Rice	plastid	48.5	42.86
TraesCS2B01G214600.1	Wheat	nucleus, plastid	47.93	42.86
Zm00001d021973_P001	Maize	nucleus	47.56	42.74
TraesCS2A01G192600.1	Wheat	plastid	46.62	41.75
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	46.24	40.8
HORVU2Hr1G035730.4	Barley	cytosol, plastid	42.86	38.26
EER94653	Sorghum	plastid	47.37	37.95
Zm00001d029607_P001	Maize	plastid	44.17	37.3
Bra036041.1-P	Field mustard	mitochondrion	22.18	28.23
Bra027378.1-P	Field mustard	cytosol	20.86	21.76

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	EnsemblPlantsGene:Bra017842	EnsemblPlants:Bra017842.1	EnsemblPlants:Bra017842.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956	GO:GO:0009987
GO:GO:0043565	GO:GO:0048366	InterPro:IPR005202	UniProt:M4DMV5	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI0002540D55	SEG:seg

Description

AT4G37650 (E=5e-243) SHR, SGR7 | SHR (SHORT ROOT); protein binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA03:+:30883883..30885481

Molecular Weight (calculated)

59856.8 Da

IEP (calculated)

5.791

GRAVY (calculated)

-0.433

Length

532 amino acids

Sequence
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNHNNFPT NDVVEECFNF FMDEEDLSSS SSHHNHHHTN PTSYYSPFTT PTQYHPATSS
101: TPPSTAAAAL ASPYSSSGHH NDPSAFSIPQ TPPSFDFSSN AKWADSILLE AARAFSDKDT TRAQQILWTL NELSSPYGDT EQKLAYYFLQ ALFNRMTGSG
201: ERCYRTMVTA AATEKTCSFE STRKTVLKFQ EVSPWATFGH VAANGAILEA VDGEAKIHIV DISSTFCTQW PTLLEALATR SDDTPHLRLT TVVVANKHVN
301: DQTATHRMMK EIGSRMEKFA RLMGVPFKFN IIHHVGDLSE FDLNELDVKA DEVLAVNCVC AMHGITPRGN PRDAVISNFR RLRPRIVTIV EEEADLVGDE
401: EQGFDDEFLR SFGECLRWFR VCFESLEESF PRTSNERLML ERVAGRAIVD LVACEHSDST ERRETARKWS RRMRNGGFGA VGYSDEVADD VRALLRRYKE
501: GVWSMVPCSD ATGIFLCWRD QPVVWASAWR PT

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.