Factsheet for Os03t0433200-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0242200-01
Os07t0567700-02
Os07t0581366-00
Os08t0538700-01
Os11t0124300-01
Os11t0533500-01
Os12t0122000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	Os01t0242200-01	AT1G03840.1	17785527
AT4G37650.1	Os07t0581366-00	AT1G03840.1	17785527
AT4G37650.1	Os08t0538700-01	AT3G12280.1	22921914
AT4G37650.1	Os11t0533500-01	AT3G12280.1	22921914
AT4G37650.1	Os11t0124300-01	AT3G54220.1	17446396
AT4G37650.1	Os12t0122000-01	AT3G54220.1	17446396
AT4G37650.1	Os11t0124300-01	AT3G54220.1	17785527
AT4G37650.1	Os12t0122000-01	AT3G54220.1	17785527
AT4G37650.1	Os11t0124300-01	AT3G54220.1	18500650
AT4G37650.1	Os12t0122000-01	AT3G54220.1	18500650
AT4G37650.1	Os11t0124300-01	AT3G54220.1	22921914
AT4G37650.1	Os12t0122000-01	AT3G54220.1	22921914
AT4G37650.1	Os07t0567700-02	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029607_P001	Maize	plastid	65.67	62.86
Os07t0586900-01	Rice	plastid	60.7	60.8
GSMUA_Achr8P30950_001	Banana	mitochondrion	51.41	58.49
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	51.58	58.46
EER94653	Sorghum	plastid	63.18	57.38
GSMUA_Achr4P16460_001	Banana	nucleus	48.42	54.99
PGSC0003DMT400055239	Potato	nucleus	40.13	53.19
KRH28353	Soybean	plastid	41.29	51.66
KRH77129	Soybean	plastid	40.46	51.26
Bra010606.1-P	Field mustard	nucleus	39.3	50.64
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	40.96	50.0
CDY50264	Canola	nucleus, plastid	38.81	49.26
KRH58109	Soybean	cytosol, plastid	40.3	48.7
KRH04424	Soybean	plastid	39.8	47.71
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	39.97	47.53
AT4G37650.1	Thale cress	cytosol, plastid	40.8	46.33
CDX72645	Canola	cytosol, plastid	40.8	46.24
Bra017842.1-P	Field mustard	cytosol, plastid	40.8	46.24
Bra011777.1-P	Field mustard	cytosol, plastid	40.46	45.78
CDY44032	Canola	cytosol, plastid	39.8	45.71
Os05t0500600-01	Rice	cytosol	23.38	33.18
Os07t0589200-00	Rice	cytosol	23.38	29.81
Os03t0408600-01	Rice	nucleus	21.23	24.47

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	EntrezGene:9269685	ProteinID:AAS07303.1	ProteinID:ABF96780.1	ProteinID:BAH92215.1
ProteinID:BAS84831.1	EMBL:CM000140	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008356	GO:GO:0009058	GO:GO:0009956	GO:GO:0009987	GO:GO:0043565	GO:GO:0045930
GO:GO:0048366	GO:GO:0055072	InterPro:IPR005202	EnsemblPlantsGene:Os03g0433200	EnsemblPlants:Os03t0433200-00	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	UniProt:Q75I13	InterPro:Short-root	InterPro:TF_GRAS
UniParc:UPI000023950F	RefSeq:XP_015629293.1	SEG:seg	:	:	:

Description

SHORT ROOT GENE 2Similar to Protein SHORT-ROOT 2. (Os03t0433200-00)

Coordinates

chr3:-:18238724..18240535

Molecular Weight (calculated)

64251.0 Da

IEP (calculated)

6.371

GRAVY (calculated)

-0.354

Length

603 amino acids

Sequence
(BLAST)

001: MDTLFRLVSL HHHHHHQHAA SPSPPDQPHK SYPSSRGSTS SPSSHHTHNH TYYHHSHSHY NNNSNTNYYY QGGGGGGGGY YYAEEQQPAA YLEECGNGHQ
101: FYMDEDFSSS SSSRQFHSGT GAPSSAPVPP PPSATTSSAG GHGLFEAADF SFPQVDISLD FGGSPAVPSS SGAGAGAGAA PSSSGRWAAQ LLMECARAVA
201: GRDSQRVQQL MWMLNELASP YGDVDQKLAS YFLQGLFARL TTSGPRTLRT LATASDRNAS FDSTRRTALK FQELSPWTPF GHVAANGAIL ESFLEAAAAG
301: AAASSSSSSS SSTPPTRLHI LDLSNTFCTQ WPTLLEALAT RSSDDTPHLS ITTVVPTAAP SAAAQRVMRE IGQRLEKFAR LMGVPFSFRA VHHSGDLADL
401: DLAALDLREG GATAALAVNC VNALRGVARG RDAFVASLRR LEPRVVTVVE EEADLAAPEA DASSEADTDA AFVKVFGEGL RFFSAYMDSL EESFPKTSNE
501: RLSLERAVGR AIVDLVSCPA SQSAERRETA ASWARRMRSA GFSPAAFSED VADDVRSLLR RYKEGWSMRD AGGATDDAAG AAAAGAFLAW KEQPVVWASA
601: WKP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.