Factsheet for GSMUA_Achr4P16460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr4P23590_001
GSMUA_Achr5P21440_001
GSMUA_Achr6P08220_001
GSMUA_Achr6P27030_001
GSMUA_Achr7P14780_001
GSMUA_Achr7P22720_001
GSMUA_Achr8P00470_001
GSMUA_Achr8P09400_001
GSMUA_Achr9P06650_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	GSMUA_Achr10P...	AT1G03840.1	17785527
AT4G37650.1	GSMUA_Achr6P27030_001	AT1G03840.1	17785527
AT4G37650.1	GSMUA_Achr7P14780_001	AT1G03840.1	17785527
AT4G37650.1	GSMUA_Achr9P06650_001	AT1G03840.1	17785527
AT4G37650.1	GSMUA_Achr6P08220_001	AT3G12280.1	22921914
AT4G37650.1	GSMUA_Achr8P00470_001	AT3G12280.1	22921914
AT4G37650.1	GSMUA_Achr11P...	AT3G54220.1	17446396
AT4G37650.1	GSMUA_Achr5P21440_001	AT3G54220.1	17446396
AT4G37650.1	GSMUA_Achr8P09400_001	AT3G54220.1	17446396
AT4G37650.1	GSMUA_Achr11P...	AT3G54220.1	17785527
AT4G37650.1	GSMUA_Achr5P21440_001	AT3G54220.1	17785527
AT4G37650.1	GSMUA_Achr8P09400_001	AT3G54220.1	17785527
AT4G37650.1	GSMUA_Achr11P...	AT3G54220.1	18500650
AT4G37650.1	GSMUA_Achr5P21440_001	AT3G54220.1	18500650
AT4G37650.1	GSMUA_Achr8P09400_001	AT3G54220.1	18500650
AT4G37650.1	GSMUA_Achr11P...	AT3G54220.1	22921914
AT4G37650.1	GSMUA_Achr5P21440_001	AT3G54220.1	22921914
AT4G37650.1	GSMUA_Achr8P09400_001	AT3G54220.1	22921914
AT4G37650.1	GSMUA_Achr7P22720_001	AT5G03150.1	17785527
AT4G37650.1	GSMUA_Achr4P23590_001	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G194800.1	Wheat	cytosol, plastid	50.28	69.9
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	64.6	64.47
GSMUA_Achr8P30950_001	Banana	mitochondrion	62.71	62.83
Zm00001d006721_P001	Maize	nucleus	61.02	55.29
PGSC0003DMT400055239	Potato	nucleus	47.08	54.95
Zm00001d021973_P001	Maize	nucleus	59.89	53.72
TraesCS2A01G192600.1	Wheat	plastid	60.08	53.7
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	49.91	53.64
Os07t0586900-01	Rice	plastid	60.64	53.49
KRH77129	Soybean	plastid	47.83	53.36
TraesCS2B01G214600.1	Wheat	nucleus, plastid	59.7	53.28
OQU90176	Sorghum	nucleus, plastid	59.89	53.18
KRH28353	Soybean	plastid	48.21	53.11
Bra010606.1-P	Field mustard	nucleus	45.2	51.28
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	48.59	50.89
KRH04424	Soybean	plastid	47.83	50.5
KRH58109	Soybean	cytosol, plastid	47.08	50.1
GSMUA_Achr6P21350_001	Banana	cytosol	37.66	49.88
HORVU2Hr1G035730.4	Barley	cytosol, plastid	55.18	49.16
GSMUA_Achr9P02380_001	Banana	cytosol	37.85	49.14
CDY50264	Canola	nucleus, plastid	43.5	48.63
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	54.99	48.42
Zm00001d029607_P001	Maize	plastid	55.37	46.67
GSMUA_Achr10P...	Banana	cytosol	35.22	46.52
CDY44032	Canola	cytosol, plastid	45.95	46.48
AT4G37650.1	Thale cress	cytosol, plastid	46.33	46.33
Bra017842.1-P	Field mustard	cytosol, plastid	45.76	45.68
CDX72645	Canola	cytosol, plastid	45.39	45.3
Bra011777.1-P	Field mustard	cytosol, plastid	45.39	45.22
EER94653	Sorghum	plastid	54.8	43.83
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	22.6	28.44
GSMUA_Achr6P07790_001	Banana	plastid	22.79	26.48
GSMUA_Achr10P...	Banana	plastid	21.85	25.49
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	21.47	24.95
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	18.46	21.92

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356
GO:GO:0009058	GO:GO:0009956	GO:GO:0009987	GO:GO:0043565	GO:GO:0048366	EnsemblPlantsGene:GSMUA_Achr4G16460_001
EnsemblPlants:GSMUA_Achr4P16460_001	EnsemblPlants:GSMUA_Achr4T16460_001	InterPro:IPR005202	UniProt:M0SPG0	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI000296FD1C	SEG:seg

Description

Protein SHORT-ROOT 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16460_001]

Coordinates

chr4:+:14927748..14929343

Molecular Weight (calculated)

58716.6 Da

IEP (calculated)

7.006

GRAVY (calculated)

-0.415

Length

531 amino acids

Sequence
(BLAST)

001: MDAIFRLFRL QTPDPQSCQN SSSKSSKAHS KQQHHHHYYI HTSSLHQQEQ CQEECGVGRC HLYMDEEDFS SSSSSSKHHR HRPLSASAST TPTPTPLFNP
101: NDLSLLRDLS LDFSPASSSS ANASSAGGRL ASHLLPECAR AVAERNSQRV QQLMWMLNEL STPYGDVDQK LASYFLQGLF ARLTSSGPRT LLSLSAASDH
201: NCSFDSTRRT ALRFQELSPW SSFGHVAANG AILESFLQSS SSSRTQRFHI LDLSNTFCTQ WPTLLEALAT RSSDDTPHLS ITTVVSSPSS SSSSAPSSSM
301: QRVMKEIGQR MEKFARLMGV PFRFNVVNHP GNLLDLDLDR LDLREGGAAA LAVNCVNTLH GVSPAGCRRD TLFAAFRRLQ PRILTIVEEE AELDAAAGGE
401: EDRDAFLKVF GESLRFFSAY YETLEESFPR TSNERLALER AAGRAVVDLV ACPAAESTER RDTAAGWSRR MQAAGFEPAQ FSDDVADDAR ALLRRYRKGW
501: SMRVAEVAGR GAGIFLEWKE QPVVWASAWK P

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.