Factsheet for Os07t0586900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0242200-01
Os07t0567700-02
Os07t0581366-00
Os08t0538700-01
Os11t0124300-01
Os11t0533500-01
Os12t0122000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	Os01t0242200-01	AT1G03840.1	17785527
AT4G37650.1	Os07t0581366-00	AT1G03840.1	17785527
AT4G37650.1	Os08t0538700-01	AT3G12280.1	22921914
AT4G37650.1	Os11t0533500-01	AT3G12280.1	22921914
AT4G37650.1	Os11t0124300-01	AT3G54220.1	17446396
AT4G37650.1	Os12t0122000-01	AT3G54220.1	17446396
AT4G37650.1	Os11t0124300-01	AT3G54220.1	17785527
AT4G37650.1	Os12t0122000-01	AT3G54220.1	17785527
AT4G37650.1	Os11t0124300-01	AT3G54220.1	18500650
AT4G37650.1	Os12t0122000-01	AT3G54220.1	18500650
AT4G37650.1	Os11t0124300-01	AT3G54220.1	22921914
AT4G37650.1	Os12t0122000-01	AT3G54220.1	22921914
AT4G37650.1	Os07t0567700-02	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G194800.1	Wheat	cytosol, plastid	58.14	91.62
OQU90176	Sorghum	nucleus, plastid	85.38	85.95
TraesCS2A01G192600.1	Wheat	plastid	82.72	83.84
Zm00001d021973_P001	Maize	nucleus	81.89	83.28
TraesCS2B01G214600.1	Wheat	nucleus, plastid	80.73	81.68
Zm00001d006721_P001	Maize	nucleus	72.43	74.4
HORVU2Hr1G035730.4	Barley	cytosol, plastid	62.46	63.09
GSMUA_Achr8P30950_001	Banana	mitochondrion	53.82	61.13
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	60.8	60.7
GSMUA_Achr4P16460_001	Banana	nucleus	53.49	60.64
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	53.32	60.34
PGSC0003DMT400055239	Potato	nucleus	40.2	53.19
KRH77129	Soybean	plastid	42.03	53.15
KRH28353	Soybean	plastid	41.86	52.28
Bra010606.1-P	Field mustard	nucleus	39.53	50.85
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	41.69	50.81
KRH04424	Soybean	plastid	41.86	50.1
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	42.19	50.1
CDY50264	Canola	nucleus, plastid	39.37	49.89
KRH58109	Soybean	cytosol, plastid	41.03	49.5
AT4G37650.1	Thale cress	cytosol, plastid	43.02	48.78
CDX72645	Canola	cytosol, plastid	42.86	48.5
Bra017842.1-P	Field mustard	cytosol, plastid	42.86	48.5
Bra011777.1-P	Field mustard	cytosol, plastid	42.52	48.03
CDY44032	Canola	cytosol, plastid	41.53	47.62
Os05t0500600-01	Rice	cytosol	23.09	32.71
Os07t0589200-00	Rice	cytosol	23.26	29.6
Os03t0408600-01	Rice	nucleus	20.76	23.9

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	EntrezGene:4343753	EMBL:AK120959	ProteinID:BAC20900.1	ProteinID:BAD30442.1
ProteinID:BAF22047.1	ProteinID:BAT02401.1	ProteinID:EEE67495.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956	GO:GO:0009987	GO:GO:0043565
GO:GO:0045930	GO:GO:0048366	GO:GO:0055072	InterPro:IPR005202	EnsemblPlantsGene:Os07g0586900	EnsemblPlants:Os07t0586900-01
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	UniProt:Q8H2X8	InterPro:Short-root
InterPro:TF_GRAS	UniParc:UPI0000E12BC4	RefSeq:XP_015645491.1	SEG:seg	:	:

Description

SHORT ROOT GENE 1GRAS transcription factor domain containing protein. (Os07t0586900-01)

Coordinates

chr7:+:23868809..23871087

Molecular Weight (calculated)

64712.7 Da

IEP (calculated)

5.764

GRAVY (calculated)

-0.400

Length

602 amino acids

Sequence
(BLAST)

001: MDTLFRLVSL QAASEQQQQQ QQSASYNSRS TTSSGSRSSS HQTNASYSYY HHSSNSGGGG GGGGGYYYGG QQPPPSQYYY LEPYQEECGN APHHQLYMDE
101: DFSSSSSSRH FHHGARVQQQ QPPASSTPTG TAPTPPLSTS STAAGAGHGL FEAADLSFPP DLNLDFSSPA SSSGGGTASS GAVGGGGGGR WASQLLLECA
201: RSVAARDSQR VQQLMWMLNE LASPYGDVEQ KLASYFLQGL FARLTASGPR TLRTLAAASD RNTSFDSTRR TALRFQELSP WSSFGHVAAN GAILESFLEV
301: AAAASSETQR FHILDLSNTF CTQWPTLLEA LATRSADETP HLSITTVVSA APSAPTAAVQ RVMREIGQRM EKFARLMGVP FRFRAVHHSG DLAELDLDAL
401: DLREGGATTA LAVNCVNSLR GVVPGRARRR DAFAASLRRL DPRVVTVVEE EADLVASDPD ASSATEEGGD TEAAFLKVFG EGLRFFSAYM DSLEESFPKT
501: SNERLALERG AGRAIVDLVS CPASESMERR ETAASWARRM RSAGFSPVAF SEDVADDVRS LLRRYREGWS MREAGTDDSA AGAGVFLAWK EQPLVWASAW
601: RP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.