Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G194800.1 | Wheat | cytosol, plastid | 62.52 | 97.38 |
| TraesCS2A01G192600.1 | Wheat | plastid | 89.24 | 89.39 |
| OQU90176 | Sorghum | nucleus, plastid | 81.85 | 81.44 |
| Os07t0586900-01 | Rice | plastid | 81.68 | 80.73 |
| Zm00001d021973_P001 | Maize | nucleus | 78.15 | 78.55 |
| Zm00001d006721_P001 | Maize | nucleus | 72.44 | 73.55 |
| HORVU2Hr1G035730.4 | Barley | cytosol, plastid | 67.39 | 67.28 |
| GSMUA_Achr1P22470_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 54.62 | 61.09 |
| GSMUA_Achr8P30950_001 | Banana | mitochondrion | 53.61 | 60.19 |
| GSMUA_Achr4P16460_001 | Banana | nucleus | 53.28 | 59.7 |
| KRH77129 | Soybean | plastid | 42.35 | 52.94 |
| PGSC0003DMT400055239 | Potato | nucleus | 39.5 | 51.65 |
| KRH28353 | Soybean | plastid | 41.51 | 51.24 |
| KRH04424 | Soybean | plastid | 42.52 | 50.3 |
| VIT_07s0129g00030.t01 | Wine grape | cytosol, plastid | 41.51 | 50.0 |
| Bra010606.1-P | Field mustard | nucleus | 39.16 | 49.79 |
| Solyc02g092370.1.1 | Tomato | mitochondrion, nucleus | 42.02 | 49.31 |
| KRH58109 | Soybean | cytosol, plastid | 41.34 | 49.3 |
| CDY50264 | Canola | nucleus, plastid | 38.82 | 48.63 |
| Bra017842.1-P | Field mustard | cytosol, plastid | 42.86 | 47.93 |
| AT4G37650.1 | Thale cress | cytosol, plastid | 42.69 | 47.83 |
| CDX72645 | Canola | cytosol, plastid | 42.69 | 47.74 |
| CDY44032 | Canola | cytosol, plastid | 41.68 | 47.24 |
| Bra011777.1-P | Field mustard | cytosol, plastid | 42.02 | 46.9 |
| TraesCS1B01G332000.1 | Wheat | cytosol | 23.03 | 33.01 |
| TraesCS2B01G212300.1 | Wheat | endoplasmic reticulum, plasma membrane | 22.86 | 26.93 |
| TraesCS2B01G481900.1 | Wheat | nucleus | 20.5 | 23.51 |
Protein Annotations
| MapMan:15.5.12 | MapMan:26.3.1.4 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 | GO:GO:0009058 |
| GO:GO:0009956 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0045930 | GO:GO:0048366 | GO:GO:0055072 |
| InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF9 | InterPro:Short-root |
| InterPro:TF_GRAS | EnsemblPlantsGene:TraesCS2B01G214600 | EnsemblPlants:TraesCS2B01G214600.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2B:+:199530429..199532216
Molecular Weight (calculated)
64030.0 Da
IEP (calculated)
5.977
GRAVY (calculated)
-0.418
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTLFRLVSL QASEQQQQQQ QSASYNSRST TSSGSRSSSH QTNASYNYYH HSSSSGGGGG GGQYYYSQQQ QPQQSYYLEP YQEECGGNAH QHHLYMDEDF
101: SSSSSSRQHF HSHGGAAHPP TSSATPTAPT PPLSTSSTAG GAGHALFEAA DLSFPPDLNL DFSSPASSSG AGGTASSAAV GGGGGGRWAS QLLMECARAV
201: ATRESQRVQQ LMWMLNELAS PYGDVEQKLA SYFLQGLFAR LTASGPRTLR TLAAATDRNT SFDSTRRTAL RFQELSPWSS FGHVAANGAI LESFLEAAAA
301: SSEPQRFHIL DLSNTFCTQW PTLLEALATR SPDDTPHLSI TTVVSAAPSA PTSAVQRVMR EIGQRMEKFA RLMGVPFRFR AVHHSGDLAE LDLDSLDLRG
401: GGATTGIAVN CMNSLRGVVP GGARRRGAFA ASLRRLEPRV VTVVEEEADL VATDPDASDE GGDTEAAFLK VFGEGLRFFS AYMDSLEESF PKTSNERLAL
501: ERGAGRAIVD LVSCPASESM ERRETAAAWA RRLRSAGFSP VPFSEDVADD VRSLLRRYRE GWSMREAGTD DSAAGAGVFL AWKEQPLVWA SAWRP
101: SSSSSSRQHF HSHGGAAHPP TSSATPTAPT PPLSTSSTAG GAGHALFEAA DLSFPPDLNL DFSSPASSSG AGGTASSAAV GGGGGGRWAS QLLMECARAV
201: ATRESQRVQQ LMWMLNELAS PYGDVEQKLA SYFLQGLFAR LTASGPRTLR TLAAATDRNT SFDSTRRTAL RFQELSPWSS FGHVAANGAI LESFLEAAAA
301: SSEPQRFHIL DLSNTFCTQW PTLLEALATR SPDDTPHLSI TTVVSAAPSA PTSAVQRVMR EIGQRMEKFA RLMGVPFRFR AVHHSGDLAE LDLDSLDLRG
401: GGATTGIAVN CMNSLRGVVP GGARRRGAFA ASLRRLEPRV VTVVEEEADL VATDPDASDE GGDTEAAFLK VFGEGLRFFS AYMDSLEESF PKTSNERLAL
501: ERGAGRAIVD LVSCPASESM ERRETAAAWA RRLRSAGFSP VPFSEDVADD VRSLLRRYRE GWSMREAGTD DSAAGAGVFL AWKEQPLVWA SAWRP
001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
Arabidopsis Description
SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.