Factsheet for TraesCS4B01G162200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G290800.1	nucleus
TraesCS1B01G300100.1	nucleus
TraesCS1D01G289400.1	nucleus
TraesCS2A01G031800.1	nucleus
TraesCS2B01G043500.1	nucleus
TraesCS2D01G031400.1	nucleus
TraesCS4A01G046900.1	nucleus
TraesCS4A01G149300.1
TraesCS4A01G234600.1	nucleus
TraesCS4A01G388400.1
TraesCS4B01G080500.1	nucleus
TraesCS4B01G158500.1
TraesCS4B01G257900.1	nucleus
TraesCS4D01G079400.1	nucleus
TraesCS4D01G257800.1	nucleus
TraesCS5A01G068600.1	nucleus
TraesCS5A01G161000.1	nucleus, nucleus
TraesCS5A01G200500.2	nucleus
TraesCS5B01G075000.1	nucleus
TraesCS5B01G158400.1	nucleus, nucleus
TraesCS5B01G199100.1	nucleus
TraesCS5D01G080600.1	nucleus
TraesCS5D01G165900.1	nucleus, nucleus
TraesCS5D01G206200.1	nucleus
TraesCS7A01G089100.1
TraesCS7A01G089200.1
TraesCS7A01G308300.1
TraesCS7A01G479000.1	nucleus
TraesCS7D01G084500.1
TraesCS7D01G305100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	TraesCS2A01G031800.1	AT1G47870.1	20407024
AT3G12280.1	TraesCS2B01G043500.1	AT1G47870.1	20407024
AT3G12280.1	TraesCS2D01G031400.1	AT1G47870.1	20407024
AT3G12280.1	TraesCS2A01G031800.1	AT1G47870.1	20706207
AT3G12280.1	TraesCS2B01G043500.1	AT1G47870.1	20706207
AT3G12280.1	TraesCS2D01G031400.1	AT1G47870.1	20706207
AT3G12280.1	TraesCS5A01G200500.2	AT1G70210.1	20407024
AT3G12280.1	TraesCS5B01G199100.1	AT1G70210.1	20407024
AT3G12280.1	TraesCS5D01G206200.1	AT1G70210.1	20407024
AT3G12280.1	TraesCS4A01G388400.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7A01G089100.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7A01G089200.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7A01G308300.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7D01G084500.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS7D01G305100.1	AT3G20740.1	15221456
AT3G12280.1	TraesCS4A01G388400.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7A01G089100.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7A01G089200.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7A01G308300.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7D01G084500.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS7D01G305100.1	AT3G20740.1	18812497
AT3G12280.1	TraesCS1A01G290800.1	AT3G24140.1	24571519
AT3G12280.1	TraesCS1B01G300100.1	AT3G24140.1	24571519
AT3G12280.1	TraesCS1D01G289400.1	AT3G24140.1	24571519
AT3G12280.1	TraesCS5A01G161000.1	AT3G50070.1	20407024
AT3G12280.1	TraesCS5B01G158400.1	AT3G50070.1	20407024
AT3G12280.1	TraesCS5D01G165900.1	AT3G50070.1	20407024
AT3G12280.1	TraesCS4A01G149300.1	AT3G55760.1	20706207
AT3G12280.1	TraesCS4B01G158500.1	AT3G55760.1	20706207
AT3G12280.1	TraesCS5A01G161000.1	AT4G34160.1	20407024
AT3G12280.1	TraesCS5B01G158400.1	AT4G34160.1	20407024
AT3G12280.1	TraesCS5D01G165900.1	AT4G34160.1	20407024
AT3G12280.1	TraesCS4A01G046900.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4A01G234600.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4B01G080500.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4B01G257900.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4D01G079400.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS4D01G257800.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS5A01G068600.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS5B01G075000.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS5D01G080600.1	AT4G37630.1	20407024
AT3G12280.1	TraesCS7A01G479000.1	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	96.64	96.64
TraesCS4A01G143200.1	Wheat	plastid	96.02	96.02
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	92.76	92.86
Os11t0533500-01	Rice	nucleus	77.88	78.12
KXG26019	Sorghum	cytosol	20.39	74.35
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	65.44	73.54
OQU83580	Sorghum	plastid	63.81	72.12
KXG21076	Sorghum	plastid	63.71	71.35
Zm00001d052666_P014	Maize	nucleus	65.34	69.52
GSMUA_Achr6P08220_001	Banana	nucleus	50.87	49.85
VIT_04s0008g02780.t01	Wine grape	nucleus	49.64	48.41
KRH13310	Soybean	nucleus	49.54	48.36
KRH20664	Soybean	nucleus	49.85	48.22
VIT_14s0068g00840.t01	Wine grape	cytosol	28.75	47.96
KRH63701	Soybean	nucleus	49.44	47.83
Solyc09g091280.2.1	Tomato	cytosol	49.24	47.45
PGSC0003DMT400030280	Potato	nucleus	49.13	47.44
TraesCS7B01G162700.4	Wheat	nucleus, plastid	49.13	47.21
AT3G12280.1	Thale cress	nucleus	48.52	46.99
CDY50559	Canola	nucleus	48.42	46.8
CDY52614	Canola	cytosol	48.01	46.73
Bra038707.1-P	Field mustard	nucleus	48.42	46.61
CDY08440	Canola	nucleus	48.22	46.56
Bra034764.1-P	Field mustard	nucleus	48.11	46.46
CDX73827	Canola	nucleus	47.81	46.39
CDY42141	Canola	cytosol	47.91	46.21
Bra001446.1-P	Field mustard	nucleus	47.6	45.47
CDY00765	Canola	mitochondrion	47.4	41.67
CDY52391	Canola	nucleus	7.24	30.74

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	PFAM:PF01857	PFAM:PF01858
PFAM:PF08934	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A
InterPro:RB_B	InterPro:RB_C	InterPro:RB_N	InterPro:RB_fam	SMART:SM01367	SMART:SM01368
SUPFAM:SSF47954	EnsemblPlantsGene:TraesCS4B01G162200	EnsemblPlants:TraesCS4B01G162200.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:-:324973062..324982425

Molecular Weight (calculated)

108640.0 Da

IEP (calculated)

7.487

GRAVY (calculated)

-0.252

Length

981 amino acids

Sequence
(BLAST)

001: MEPQPPPTPA VETHFADLCK ELEVDEGVAG EAAALLEEGK GVFLTPPSFG SKSPEDVERL CFAFVLYCVA KLKGKGMKEE SSRVRLWKIL EGCKLKYNDF
101: FKESQQLLSK IDHVLRSWYG TDWEDQLELK QLQSLVNLLA DASRFYCKAF NELFLNASTG QEPGSTKSNP EYFCFGWLFF LALRSKSPEL FKDLVSCXXX
201: XXXXXAILLI HVPAKFRSFT IEGSSHSIKQ TVRGVDLLAS LCHNYHTSED RLKEMMGKFH KAIEVFFSTK AVRASECKIE TLDKIDTDGL IYFRDLLDKE
301: CFHSNFEKLE KLSSTTSWEG ELDLKRFLIN NDNIISAENS SRDFTNLSCP KRVFETLASP TKTIKNMLTV PSSPSSPANG GSVKVVQMTP VTSAMTTAKW
401: LREVISLLPE KPSSKLEEFL SSCDTDLTSD VTKRVSIILE AIFPTKPSGH WAGSMGLNCT NAFDIPWAEA RKMEASKLYY RVLEAICRAE SLNTNVNNLT
501: PLLSNERFHR CLIACSAELV LATHKTVIMM FPAVLESTGL TAFDLSKIIE NFVRHEESLP RELKRHLNSL EEQLLESMAW EKGSSLYNSL VVARPSLAPE
601: INRLGLLVES MPSLDDIVAR QNFHAEDLPA TPSKKRAADS DENGDSRSPK RLCIEPRSTL VDQISQTPPA KQSYTLKAKW RPLQSTFASP TVSNLVGGNE
701: KCAEVGVHIF FSKILKLAAI RIRNLCERLR HVEQTERVYN IFKQILDQQT TLFFNRHIDQ LILCSLYGVA KVSQLTLTFK EIVNNYRREQ QCIPEVFRSV
801: FVVNTNHNGG LGSHHVDIIV FYNEVFVPAV KPFLVALIPS GGAHPDNKKN PNSQISGSPK PSPFSNLPDM SPKKVSSSHN VYISPLRQTK KDALLSPSSR
901: SFYACIGEST HAYQSPSEDL AAINNCLNYT SRRINTRINF DMVSDSVVAG SLGQPNGVPA SSDPAGSFSF LSRKDNPGPD S

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.