CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68573	nucleus
CDX72453	nucleus
CDX72643	nucleus
CDX75405	nucleus
CDX76265	nucleus
CDX77460	nucleus
CDX83112	nucleus
CDX85167	nucleus
CDX92996	nucleus
CDX94841	nucleus
CDY02095	nucleus
CDY11608	nucleus
CDY16998	nucleus
CDY17797	nucleus
CDY18083	nucleus
CDY22172
CDY23022	nucleus
CDY27567
CDY29570	nucleus
CDY35481
CDY38800	nucleus
CDY40826
CDY49278	nucleus
CDY53612
CDY57741	nucleus
CDY58656
CDY59943	nucleus
CDY64587	nucleus
CDY67142	nucleus
CDY69708	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	CDY16998	AT1G47870.1	20407024
AT3G12280.1	CDY17797	AT1G47870.1	20407024
AT3G12280.1	CDY16998	AT1G47870.1	20706207
AT3G12280.1	CDY17797	AT1G47870.1	20706207
AT3G12280.1	CDY11608	AT1G70210.1	20407024
AT3G12280.1	CDY38800	AT1G70210.1	20407024
AT3G12280.1	CDY59943	AT1G70210.1	20407024
AT3G12280.1	CDY67142	AT1G70210.1	20407024
AT3G12280.1	CDY22172	AT3G08880.1	21798944
AT3G12280.1	CDY58656	AT3G08880.1	21798944
AT3G12280.1	CDY27567	AT3G20740.1	15221456
AT3G12280.1	CDY53612	AT3G20740.1	15221456
AT3G12280.1	CDY27567	AT3G20740.1	18812497
AT3G12280.1	CDY53612	AT3G20740.1	18812497
AT3G12280.1	CDX77460	AT3G24140.1	24571519
AT3G12280.1	CDX85167	AT3G24140.1	24571519
AT3G12280.1	CDX92996	AT3G24140.1	24571519
AT3G12280.1	CDX94841	AT3G24140.1	24571519
AT3G12280.1	CDY18083	AT3G24140.1	24571519
AT3G12280.1	CDY64587	AT3G24140.1	24571519
AT3G12280.1	CDX68573	AT3G50070.1	20407024
AT3G12280.1	CDX83112	AT3G50070.1	20407024
AT3G12280.1	CDY02095	AT3G50070.1	20407024
AT3G12280.1	CDY23022	AT3G50070.1	20407024
AT3G12280.1	CDY35481	AT3G55760.1	20706207
AT3G12280.1	CDY40826	AT3G55760.1	20706207
AT3G12280.1	CDX72453	AT4G34160.1	20407024
AT3G12280.1	CDX75405	AT4G34160.1	20407024
AT3G12280.1	CDX76265	AT4G34160.1	20407024
AT3G12280.1	CDY49278	AT4G34160.1	20407024
AT3G12280.1	CDY57741	AT4G34160.1	20407024
AT3G12280.1	CDY69708	AT4G34160.1	20407024
AT3G12280.1	CDX72643	AT4G37630.1	20407024
AT3G12280.1	CDY29570	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73827	Canola	nucleus	86.29	95.25
CDY08440	Canola	nucleus	79.21	87.01
CDY42141	Canola	cytosol	78.32	85.94
CDY50559	Canola	nucleus	77.78	85.52
CDY52614	Canola	cytosol	77.15	85.42
AT3G12280.1	Thale cress	nucleus	76.43	84.21
CDY52391	Canola	nucleus	14.43	69.7
KRH13310	Soybean	nucleus	61.83	68.66
KRH20664	Soybean	nucleus	61.74	67.95
KRH63701	Soybean	nucleus	61.11	67.26
VIT_04s0008g02780.t01	Wine grape	nucleus	60.48	67.1
PGSC0003DMT400030280	Potato	nucleus	59.32	65.16
Solyc09g091280.2.1	Tomato	cytosol	58.96	64.64
GSMUA_Achr8P00470_001	Banana	nucleus	53.49	59.4
Os08t0538700-01	Rice	nucleus	52.87	58.42
EES14166	Sorghum	nucleus	52.69	58.1
Zm00001d052695_P016	Maize	nucleus	51.79	57.4
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	52.06	56.79
TraesCS7A01G264800.1	Wheat	nucleus	49.91	54.55
TraesCS7B01G162700.4	Wheat	nucleus, plastid	49.73	54.36
TraesCS7D01G265600.3	Wheat	nucleus	49.91	54.13
GSMUA_Achr6P08220_001	Banana	nucleus	48.21	53.75
HORVU7Hr1G055440.9	Barley	plastid	49.82	52.26
Os11t0533500-01	Rice	nucleus	42.38	48.36
TraesCS4A01G143200.1	Wheat	plastid	42.29	48.11
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	41.76	47.5
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	41.67	47.45
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	37.1	47.42
TraesCS4B01G162200.1	Wheat	nucleus	41.67	47.4
OQU83580	Sorghum	plastid	36.74	47.23
KXG21076	Sorghum	plastid	36.92	47.03
Zm00001d052666_P014	Maize	nucleus	36.92	44.69
KXG26019	Sorghum	cytosol	9.59	39.78

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.10.472.140	MapMan:13.1.2.1	GO:A0A078EF88	EnsemblPlants:CDY00765	ProteinID:CDY00765
ProteinID:CDY00765.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSBRNA2T00110646001	PFAM:PF01857
PFAM:PF01858	PFAM:PF08934	PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR
InterPro:RB_A	InterPro:RB_B	InterPro:RB_C	InterPro:RB_N	InterPro:RB_fam	SMART:SM00385
SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954	TMHMM:TMhelix	UniParc:UPI0004EEFFA7	SEG:seg

Description

BnaC03g37490D

Coordinates

chrLK031921:-:1034337..1039659

Molecular Weight (calculated)

125302.0 Da

IEP (calculated)

8.534

GRAVY (calculated)

-0.175

Length

1116 amino acids

Sequence
(BLAST)

0001: MSKSVCFSFL TPACTCRYII GQRVYIYLVL FSRARLNYFL GFAVDLSLKH RFFFNSSDLR RRRYQCESSF ELWISLFSVL PATFRFFFWD LRYRNRFNKL
0101: AALETMEEVQ PPVTPPIDSN GDRSEATFLD LCEKVLFLEG SVCDEALKLF TETKQILSAN MSNIGSGTAE EVERFWFASI LYSVKMLSVR RQVDGKSVVA
0201: GGNGFNLCQI LRALKLNIVD FFRELPQFVV KAGPVLCELY GSDWESRLQA KEMQVNVVHL SLLSSYYKRG YREFFLTYDA NAENTPANSP SYLPDSYRFG
0301: WLLFLALRNH AFSRFKDLVT CTNGLVSILA ILIIHVPCRF RNFCIKDSSR FVKKGDKDVD LIASLCKIYD ASEDELRATM DKTNNLIETI LKKKPSACQT
0401: DKLDNIDTDG LTCFEDLLDE TSISTSLITL EKDYTDAVCN KSELDERVFI NEEDSLLGSG SLSAGAVNIT GVKRKIDSLS SPARTFISPL SPHKSPAAKT
0501: NSIGCANRLT ATPVSTSMTT AKWLRTVICT LPPKPSPGLE RFLKSCDRDI TSDVTRRAHV ILEAIFPNSF LGDRCTGGSL QPVNLMDDIW AKERRLEAIK
0601: LYYRVLETLC RAEAQILHAT NLNSLLTNER FHRCMLACSA ELVLATHKSI TMLFPAVLER TGITAFDLCK VIESFIRYED SLPRELRRHL NSLEERLLES
0701: MVWEKGSSMY NSLIIAKPSL AQEINQLRLL AEPMPSLDAI AALINFSEGL NHASSIQKHE TCPGQNGDIK SPKRQCTDYH SVLVERNSFT SPVKDRLLAS
0801: GNVKSKLPPP PLQSAFASPT RPNPGGGGET CAETGINIFF TKINKLAAVR INGMVERLQL SQQIRESVYR LFQHVLTQQT SLLFNRHIDQ IILCCFYGVA
0901: KLSQMRLTFK EIVFNYRKQP QCKPLVFGSV YVDSFHCRRQ GRVGPDHVNI ITFYNDVFVP AAKTLLVEIV PVKNDQDVEA NNKPEGHCPG SSKVSVFPSV
1001: PDMSPKKVSA VHNVYVSPLR ASKMDALISH SSRSSYACVG ESTRAYQSPS KDLSAINNRL NNSSNRNRKR TLNFDVELVS DSMVANSLPL QKQQNQNGSD
1101: ASPSGGAPLK TEPLHS

Best Arabidopsis Sequence Match ( AT3G12280.1 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.