CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90996	nucleus
KRG99255	nucleus
KRH04529	nucleus
KRH07603	nucleus
KRH22237
KRH27099
KRH28363	nucleus
KRH28424	nucleus
KRH31935
KRH35760	nucleus
KRH45743	nucleus
KRH51709	nucleus
KRH57973	nucleus
KRH61047	nucleus
KRH69067
KRH69476	nucleus
KRH71094	nucleus
KRH71526
KRH74675	nucleus
KRH75571	nucleus
KRH77050	nucleus
KRH77118	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	KRH07603	AT1G47870.1	20407024
AT3G12280.1	KRH51709	AT1G47870.1	20407024
AT3G12280.1	KRH61047	AT1G47870.1	20407024
AT3G12280.1	KRH07603	AT1G47870.1	20706207
AT3G12280.1	KRH51709	AT1G47870.1	20706207
AT3G12280.1	KRH61047	AT1G47870.1	20706207
AT3G12280.1	KRG99255	AT1G70210.1	20407024
AT3G12280.1	KRH45743	AT1G70210.1	20407024
AT3G12280.1	KRH69476	AT1G70210.1	20407024
AT3G12280.1	KRH74675	AT1G70210.1	20407024
AT3G12280.1	KRH22237	AT3G20740.1	15221456
AT3G12280.1	KRH27099	AT3G20740.1	15221456
AT3G12280.1	KRH31935	AT3G20740.1	15221456
AT3G12280.1	KRH71526	AT3G20740.1	15221456
AT3G12280.1	KRH22237	AT3G20740.1	18812497
AT3G12280.1	KRH27099	AT3G20740.1	18812497
AT3G12280.1	KRH31935	AT3G20740.1	18812497
AT3G12280.1	KRH71526	AT3G20740.1	18812497
AT3G12280.1	KRH71094	AT3G24140.1	24571519
AT3G12280.1	KRH75571	AT3G24140.1	24571519
AT3G12280.1	KRH04529	AT3G50070.1	20407024
AT3G12280.1	KRH28424	AT3G50070.1	20407024
AT3G12280.1	KRH57973	AT3G50070.1	20407024
AT3G12280.1	KRH77050	AT3G50070.1	20407024
AT3G12280.1	KRH69067	AT3G55760.1	20706207
AT3G12280.1	KRG90996	AT4G34160.1	20407024
AT3G12280.1	KRH35760	AT4G34160.1	20407024
AT3G12280.1	KRH28363	AT4G37630.1	20407024
AT3G12280.1	KRH77118	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63701	Soybean	nucleus	98.13	98.13
KRH13310	Soybean	nucleus	96.15	97.01
VIT_04s0008g02780.t01	Wine grape	nucleus	76.04	76.64
PGSC0003DMT400030280	Potato	nucleus	71.1	70.96
Solyc09g091280.2.1	Tomato	cytosol	70.51	70.24
CDY52614	Canola	cytosol	69.13	69.54
AT3G12280.1	Thale cress	nucleus	69.43	69.5
CDY08440	Canola	nucleus	69.53	69.39
Bra034764.1-P	Field mustard	nucleus	69.43	69.29
CDY42141	Canola	cytosol	68.93	68.73
CDY50559	Canola	nucleus	68.64	68.57
Bra038707.1-P	Field mustard	nucleus	68.44	68.11
CDX73827	Canola	nucleus	66.77	66.96
Bra001446.1-P	Field mustard	nucleus	66.96	66.11
GSMUA_Achr8P00470_001	Banana	nucleus	64.0	64.58
Os08t0538700-01	Rice	nucleus	62.62	62.87
CDY00765	Canola	mitochondrion	67.95	61.74
EES14166	Sorghum	nucleus	61.54	61.66
Zm00001d052695_P016	Maize	nucleus	59.86	60.28
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	60.75	60.22
TraesCS7A01G264800.1	Wheat	nucleus	59.96	59.55
TraesCS7B01G162700.4	Wheat	nucleus, plastid	59.86	59.45
TraesCS7D01G265600.3	Wheat	nucleus	59.86	58.99
HORVU7Hr1G055440.9	Barley	plastid	59.86	57.05
GSMUA_Achr6P08220_001	Banana	nucleus	54.93	55.64
Os11t0533500-01	Rice	nucleus	49.61	51.43
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	43.69	50.74
TraesCS4A01G143200.1	Wheat	plastid	48.52	50.15
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	48.32	49.95
TraesCS4B01G162200.1	Wheat	nucleus	48.22	49.85
OQU83580	Sorghum	plastid	42.5	49.65
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	47.73	49.39
KXG21076	Sorghum	plastid	42.31	48.97
CDY52391	Canola	nucleus	11.05	48.48
Zm00001d052666_P014	Maize	nucleus	42.7	46.96
KXG26019	Sorghum	cytosol	11.64	43.87

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100777805	MapMan:13.1.2.1	EMBL:ACUP02008289	ncoils:Coil	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	EnsemblPlantsGene:GLYMA_13G192400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0006915
GO:GO:0007049	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0008285
GO:GO:0009058	GO:GO:0009987	GO:GO:0035189	GO:GO:0045892	GO:GO:0051726	GO:GO:2000134
UniProt:I1M0N2	EnsemblPlants:KRH20664	ProteinID:KRH20664	ProteinID:KRH20664.1	PFAM:PF01857	PFAM:PF01858
PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF17	InterPro:RB1	InterPro:RB_A	InterPro:RB_B
InterPro:RB_N	InterPro:RB_fam	SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954	UniParc:UPI000296D9FA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:30565167..30573329

Molecular Weight (calculated)

112975.0 Da

IEP (calculated)

8.039

GRAVY (calculated)

-0.285

Length

1014 amino acids

Sequence
(BLAST)

0001: MSPPPAESNA MEDGKPENGG DQVESRFFEF CKNGLALEEK SCKEATNLFG ETKHILLSNF SSMGNGTSEE AERYWFAFIL YSVKKLIQKN DEGEKEDTEN
0101: TGLSLCRILR ATKLNIADFF KELPQFVVKA GPTLSNLYGT DWENRLEAKE MHANAIHLKI LSKYYKRVFG EFFVATDTNA EINSPITVHA SEYHRFGWLL
0201: FLALRVHAFS RFKDLVTCTN GLISILAILI IHVPTRFRNF NIHDSSRFVK KSNKGVDLLA SLCNIYNTSE DELRKTMEKA NNVIADILKK QPCLASECET
0301: ENLENIDKDG LTYFKDLMEE SSLPSSLSML EKDYDYMIRN KSELDERLFI NEDDSLLASV SLSGGSVSAG GVKRKFDSMA SPAKTITSPL SPHRSPASHA
0401: NGIPGSANSK MAATPVSTAM TTAKWLRTVI SPLPSKPSPE LERFLTSCDR DATSDVVRRA QIILQAIFPS SPLGERCVTG SLQSANLMDN IWAEQRRLEA
0501: LKLYYRVLEA MCRAEAQVLH ATNLTSLLTN ERFHRCMLAC SAELVLATHK TVTMLFPAVL ERTGITAFDL SKVIESFIRH EESLPRELRR HLNSLEERLL
0601: ESMVWEKGSS MYNSLAVARP SLSAEINRLG LLAEPMPSLD EIAMHINFSC GGLPPVPTLP KLESSSNQNG DIRSPKRNVL MERNSFTSPV KDRLLPFNSL
0701: KSKLPPPPLQ SAFASPTKPN PGGGGETCAE TGINIFFGKI IKLGAVRISG MVERLQLSQQ IRENVYSLFQ RILNQWTSLF FNRHIDQIIL CCFYGVAKIS
0801: QLNLTFKEIV YNYRKQPHCK PQVFRSVFVD WSLARRNGRT GQEHIDIITF YNEIFIPSVK PLLVELGPAG PTTKSDRIPE INKNDGHLAQ CPGSPKISPF
0901: PTLPDMSPKK VSATHNVYVS PLRSSKMEAL ISHSSKSYYA CVGESTHAYQ SPSKDLTAIN NRLNGNRKVR GPLNFDDVDI GLVSDSMVAN SLYLQNGSCA
1001: SSSGAPLKSE QPDS

Best Arabidopsis Sequence Match ( AT3G12280.2 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.